RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13274968 13274968 PRJNA554794_P_NODE_21791_length_176_cov_1.031496_g17862_i0 PRJNA554794 21791 176 1.031496 1.81543296 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 119 1.44e-22   NTclustered gi|820689956|tpe|LN714480.1| 572307 g17862 i0 86.364 60.2670454545455 110 13 62 2 44 152 1708906 1708798 TPA_asm: Neospora caninum Liverpool, chromosome chrVI, complete genome blastn 10607 119 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
22197799 22197799 PRJNA554794_P_NODE_20078_length_200_cov_1.079470_g16149_i0 PRJNA554794 20078 200 1.07947 2.15894 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.017   NTclustered gi|916507700|ref|XM_013498696.1| 44415 g16149 i0 100 0.42 28 0 14 0 65 92 278 251 Eimeria mitis uncharacterized protein (EMH_0068110), partial mRNA blastn 84 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;