RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA554794 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11999869 11999869 PRJNA554794_P_NODE_23130_length_165_cov_0.879310_g19201_i0 PRJNA554794 23130 165 0.87931 1.4508615 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 100 4.86e-17   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g19201 i0 92.754 0.418181818181818 69 5 42 0 1 69 6082258 6082326 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 69 100 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
23473380 23473380 PRJNA554794_P_NODE_22459_length_168_cov_1.436975_g18530_i0 PRJNA554794 22459 168 1.436975 2.414118 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 65.8 1.81e-6   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g18530 i0 95.122 0.244047619047619 41 2 24 0 40 80 1463586 1463626 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 41 65.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;