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contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 32 ✖

bioproject 1

  • PRJNA554794 · 32 ✖

analysis 1

  • blastn · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
520903 520903 PRJNA554794_P_NODE_22481_length_168_cov_1.033613_g18552_i0 PRJNA554794 22481 168 1.033613 1.73646984 Oryza sativa 4530 Plants Plants 289 9.879999999999999e-74   NTclustered gi|32994097|dbj|AK108888.1| 39947 g18552 i0 98.182 0.982142857142857 165 3 98 0 4 168 944 780 Oryza sativa Japonica Group cDNA clone:002-152-E02, full insert sequence blastn 165 289 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
1796528 1796528 PRJNA554794_P_NODE_21882_length_175_cov_0.936508_g17953_i0 PRJNA554794 21882 175 0.936508 1.638889 Hordeum vulgare 4513 Plants Plants 78.7 2.43e-10   NTclustered gi|326501771|dbj|AK371477.1| 112509 g17953 i0 87.879 0.377142857142857 66 8 38 0 19 84 487 422 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135B02 blastn 66 78.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
1796550 1796550 PRJNA554794_P_NODE_9222_length_455_cov_1.056650_g5425_i0 PRJNA554794 9222 455 1.05665 4.8077575 Bathycoccus prasinos 41875 Plants Plants 86.1 4.35e-12   NTclustered gi|290770787|emb|FN563099.1| 41875 g5425 i0 89.706 15.2307692307692 68 5 15 2 263 328 2256 2189 Bathycoccus prasinos plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain SCCAP K-0417 blastn 6930 86.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
2398984 2398984 PRJNA554794_P_NODE_23442_length_164_cov_0.930435_g19513_i0 PRJNA554794 23442 164 0.930435 1.5259134 Lauraceae 3433 Plants Plants 303 3.42e-78   NTclustered gi|2249528608|gb|ON685429.1| 3435 g19513 i0 100 99.8231707317073 164 0 100 0 1 164 2387 2224 Persea americana isolate BPTPS118 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16371 303 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
3071824 3071824 PRJNA554794_P_NODE_15063_length_212_cov_0.858896_g11134_i0 PRJNA554794 15063 212 0.858896 1.82085952 Alnus glutinosa 3517 Plants Plants 385 1.62e-102   NTclustered gi|2649039779|ref|XR_009897396.1| 3517 g11134 i0 99.526 99.9952830188679 211 1 99 0 1 211 916 1126 PREDICTED: Alnus glutinosa 18S ribosomal RNA (LOC133855577), rRNA blastn 21199 385 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Alnus Alnus glutinosa
5624720 5624720 PRJNA554794_P_NODE_10885_length_343_cov_0.948980_g6964_i0 PRJNA554794 10885 343 0.94898 3.2550014 Hibiscus cannabinus 229543 Plants Plants 355 2.21e-93   NTclustered gi|1199285720|gb|KY382448.1| 229543 g6964 i0 89.362 67.1574344023324 282 30 82 0 1 282 747 1028 Hibiscus cannabinus elongation factor 1-alpha (EF1a) mRNA, complete cds blastn 23035 355 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Hibiscus Hibiscus cannabinus
6898870 6898870 PRJNA554794_P_NODE_8786_length_493_cov_1.576577_g5050_i0 PRJNA554794 8786 493 1.576577 7.77252461 Phyllostachys edulis 38705 Plants Plants 475 2.4099999999999993e-129   NTclustered gi|242386712|emb|FP099117.1| 38705 g5050 i0 88.689 57.6409736308316 389 44 79 0 1 389 978 1366 Phyllostachys edulis cDNA clone: bphyem207e20, full insert sequence blastn 28417 475 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
8173702 8173702 PRJNA554794_P_NODE_24007_length_163_cov_0.885965_g20078_i0 PRJNA554794 24007 163 0.885965 1.44412295 Chlamydomonas reinhardtii 3055 Plants Plants 165 1.67e-36   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g20078 i0 86.577 12 149 20 91 0 1 149 780 632 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 1956 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8173706 8173706 PRJNA554794_P_NODE_24487_length_161_cov_1.955357_g20558_i0 PRJNA554794 24487 161 1.955357 3.14812477 Neltuma alba 207710 Plants Plants 87.9 3.67e-13   NTclustered gi|1624100225|ref|XM_028907980.1| 207710 g20558 i0 78.014 0.875776397515528 141 29 87 2 1 140 1398 1537 PREDICTED: Prosopis alba protein transport protein Sec61 subunit alpha-like (LOC114722056), mRNA blastn 141 87.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Neltuma Neltuma alba
9449317 9449317 PRJNA554794_P_NODE_22128_length_172_cov_1.317073_g18199_i0 PRJNA554794 22128 172 1.317073 2.2653655599999998 Lolium rigidum 89674 Plants Plants 167 4.939999999999999e-37   NTclustered gi|2212514110|ref|XM_047239139.1| 89674 g18199 i0 88.889 94.4302325581395 135 15 78 0 38 172 1270 1136 PREDICTED: Lolium rigidum polyubiquitin (LOC124707483), transcript variant X2, mRNA blastn 16242 167 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium rigidum
11999816 11999816 PRJNA554794_P_NODE_14690_length_216_cov_0.676647_g10761_i0 PRJNA554794 14690 216 0.676647 1.46155752 Cucurbita pepo 3663 Plants Plants 204 4.9699999999999994e-48   NTclustered gi|1333129923|ref|XM_023683769.1| 3664 g10761 i0 83.962 48.2175925925926 212 34 98 0 2 213 1051 840 PREDICTED: Cucurbita pepo subsp. pepo cell division control protein 48 homolog D-like (LOC111800178), mRNA blastn 10415 204 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucurbita Cucurbita pepo
13274923 13274923 PRJNA554794_P_NODE_14511_length_219_cov_0.935294_g10582_i0 PRJNA554794 14511 219 0.935294 2.04829386 Phyllostachys edulis 38705 Plants Plants 405 1.29e-108   NTclustered gi|242385481|emb|FP098484.1| 38705 g10582 i0 100 78.1643835616438 219 0 100 0 1 219 794 576 Phyllostachys edulis cDNA clone: bphyem103i24, full insert sequence blastn 17118 405 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
13275005 13275005 PRJNA554794_P_NODE_9451_length_437_cov_1.072165_g5626_i0 PRJNA554794 9451 437 1.072165 4.68536105 Hordeum vulgare 4513 Plants Plants 303 1.0600000000000001e-77   NTclustered gi|151426886|dbj|AK248935.1| 112509 g5626 i0 80.542 83.2974828375286 406 69 92 7 8 408 444 44 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf9l20, mRNA sequence blastn 36401 303 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
14549963 14549963 PRJNA554794_P_NODE_22492_length_168_cov_0.831933_g18563_i0 PRJNA554794 22492 168 0.831933 1.39764744 Physcomitrium patens 3218 Plants Plants 111 2.3e-20   NTclustered gi|1373950870|ref|XM_024544863.1| 3218 g18563 i0 85.321 1.76785714285714 109 15 65 1 60 168 3509 3402 PREDICTED: Physcomitrella patens uncharacterized LOC112294447 (LOC112294447), mRNA blastn 297 111 1 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Funariales Funariaceae Physcomitrium Physcomitrium patens
15823640 15823640 PRJNA554794_P_NODE_12133_length_285_cov_1.669492_g8204_i0 PRJNA554794 12133 285 1.669492 4.7580522 Eragrostis tef 110835 Plants Plants 217 8.82e-52   NTclustered gi|2710185570|gb|CP137599.1| 110835 g8204 i0 80.919 89.4315789473684 283 47 98 5 1 279 3914202 3913923 Eragrostis tef cultivar Dabbi chromosome 9B blastn 25488 217 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Eragrostis Eragrostis tef
15823697 15823697 PRJNA554794_P_NODE_22833_length_166_cov_0.871795_g18904_i0 PRJNA554794 22833 166 0.871795 1.4471797 Chlorella variabilis 554065 Plants Plants 65.8 1.79e-6   NTclustered gi|552838620|ref|XM_005849555.1| 554065 g18904 i0 97.368 5.7289156626506 38 1 23 0 4 41 147 110 Chlorella variabilis expressed protein (CHLNCDRAFT_143104) mRNA, partial cds blastn 951 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
15823705 15823705 PRJNA554794_P_NODE_23533_length_164_cov_0.886957_g19604_i0 PRJNA554794 23533 164 0.886957 1.45460948 Nicotiana sylvestris 4096 Plants Plants 87.9 3.75e-13   NTclustered gi|2864942411|ref|XR_011402674.1| 4096 g19604 i0 88 0.457317073170732 75 7 45 2 1 74 299 372 PREDICTED: Nicotiana sylvestris uncharacterized lncRNA (LOC138879084), ncRNA blastn 75 87.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana sylvestris
17098514 17098514 PRJNA554794_P_NODE_21374_length_181_cov_0.916667_g17445_i0 PRJNA554794 21374 181 0.916667 1.65916727 Nymphaea colorata 210225 Plants Plants 196 6.709999999999999e-46   NTclustered gi|1750919780|emb|LR722042.1| 210225 g17445 i0 87.209 92.0994475138122 172 22 95 0 10 181 14577 14406 XXX blastn 16670 196 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Nymphaeales Nymphaeaceae Nymphaea Nymphaea colorata
18372625 18372625 PRJNA554794_P_NODE_12735_length_266_cov_1.497696_g8806_i0 PRJNA554794 12735 266 1.497696 3.98387136 Pseudoscourfieldia marina 41886 Plants Plants 281 2.85e-71   NTclustered gi|308035576|dbj|AB491630.1| 41886 g8806 i0 85.932 92.0037593984962 263 37 99 0 1 263 417 155 Pseudoscourfieldia marina Btub gene for beta-tubulin, partial cds, strain: NIES-1419 blastn 24473 281 1 Eukaryota   Viridiplantae Chlorophyta Pseudoscourfieldiophyceae Pseudoscourfieldiales Pseudoscourfieldiaceae Pseudoscourfieldia Pseudoscourfieldia marina
18372627 18372627 PRJNA554794_P_NODE_13615_length_241_cov_0.880208_g9686_i0 PRJNA554794 13615 241 0.880208 2.12130128 Hordeum vulgare 4513 Plants Plants 263 9.21e-66   NTclustered gi|326496930|dbj|AK367289.1| 112509 g9686 i0 88.341 45.8755186721992 223 20 91 2 9 227 1146 926 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054B13 blastn 11056 263 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
18372683 18372683 PRJNA554794_P_NODE_22715_length_167_cov_0.720339_g18786_i0 PRJNA554794 22715 167 0.720339 1.20296613 Solanum lycopersicum 4081 Plants Plants 130 6.29e-26   NTclustered gi|225316638|dbj|AK328602.1| 4081 g18786 i0 82.166 34.4071856287425 157 22 92 4 1 154 336 183 Solanum lycopersicum cDNA, clone: LEFL3014G20, HTC in root blastn 5746 130 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
18372689 18372689 PRJNA554794_P_NODE_23435_length_164_cov_0.982609_g19506_i0 PRJNA554794 23435 164 0.982609 1.61147876 Oryza sativa 4530 Plants Plants 292 7.41e-75   NTclustered gi|32973058|dbj|AK063040.1| 39947 g19506 i0 98.78 1 164 2 100 0 1 164 23 186 Oryza sativa Japonica Group cDNA clone:001-110-D05, full insert sequence blastn 164 292 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
18372690 18372690 PRJNA554794_P_NODE_23535_length_164_cov_0.886957_g19606_i0 PRJNA554794 23535 164 0.886957 1.45460948 Solanum lycopersicum 4081 Plants Plants 52.8 0.014   NTclustered gi|149930465|gb|EF647601.1| 4081 g19606 i0 100 0.341463414634146 28 0 17 0 1 28 80344 80371 Solanum lycopersicum chromosome 9 clone C09HBa0099P03, complete sequence blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
18372705 18372705 PRJNA554794_P_NODE_5575_length_909_cov_1.613953_g2581_i0 PRJNA554794 5575 909 1.613953 14.67083277 Oryza sativa 4530 Plants Plants 532 2.69e-146   NTclustered gi|32993583|dbj|AK108374.1| 39947 g2581 i0 79.528 59.5566556655666 762 144 83 11 8 763 769 14 Oryza sativa Japonica Group cDNA clone:002-142-D11, full insert sequence blastn 54137 532 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
18974917 18974917 PRJNA554794_P_NODE_22295_length_170_cov_1.132231_g18366_i0 PRJNA554794 22295 170 1.132231 1.9247927 Magnoliopsida 3398 Plants Plants 300 4.6e-77   NTclustered gi|1934901177|gb|MN990522.1| 3406 g18366 i0 99.394 278.152941176471 165 1 97 0 6 170 5759 5595 Magnolia grandiflora isolate YB26 external transcribed spacer, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 47286 303 0.99009900990099 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Magnoliales Magnoliaceae Magnolia Magnolia grandiflora
19647304 19647304 PRJNA554794_P_NODE_24136_length_162_cov_1.088496_g20207_i0 PRJNA554794 24136 162 1.088496 1.76336352 Micromonas commoda 296587 Plants Plants 113 6.1e-21   NTclustered gi|255084000|ref|XM_002508529.1| 296587 g20207 i0 81.429 5 140 24 86 2 24 162 983 845 Micromonas commoda fatty acid desaturase mRNA blastn 810 113 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
22197769 22197769 PRJNA554794_P_NODE_13298_length_249_cov_1.215000_g9369_i0 PRJNA554794 13298 249 1.215 3.02535 Panicum hallii 206008 Plants Plants 222 1.62e-53   NTclustered gi|1435191307|ref|XM_025939252.1| 206008 g9369 i0 82.996 97.289156626506 247 40 99 2 2 247 1719 1474 PREDICTED: Panicum hallii heat shock cognate 70 kDa protein-like (LOC112875412), mRNA blastn 24225 222 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum hallii
22197780 22197780 PRJNA554794_P_NODE_15178_length_211_cov_0.592593_g11249_i0 PRJNA554794 15178 211 0.592593 1.25037123 Cannabis sativa 3483 Plants Plants 137 4.97e-28   NTclustered gi|2623542803|ref|XM_030628462.2| 3483 g11249 i0 81.714 12.6398104265403 175 23 81 7 5 174 364 194 PREDICTED: Cannabis sativa large ribosomal subunit protein eL42 (LOC115700809), mRNA blastn 2667 137 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
22197800 22197800 PRJNA554794_P_NODE_20138_length_199_cov_1.193333_g16209_i0 PRJNA554794 20138 199 1.193333 2.37473267 Micromonas commoda 296587 Plants Plants 141 3.5800000000000003e-29   NTclustered gi|255080797|ref|XM_002503926.1| 296587 g16209 i0 82.911 8.1356783919598 158 25 79 2 43 199 371 215 Micromonas commoda predicted protein mRNA blastn 1619 141 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
22197827 22197827 PRJNA554794_P_NODE_23898_length_163_cov_0.894737_g19969_i0 PRJNA554794 23898 163 0.894737 1.45842131 Solanum lycopersicum 4081 Plants Plants 252 1.25e-62   NTclustered gi|169219366|dbj|AP010258.1| 4081 g19969 i0 94.479 123.981595092025 163 9 100 0 1 163 104040 104202 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0197O20, complete sequence blastn 20209 252 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
24747114 24747114 PRJNA554794_P_NODE_12460_length_275_cov_0.938053_g8531_i0 PRJNA554794 12460 275 0.938053 2.57964575 Phyllostachys edulis 38705 Plants Plants 442 1.2799999999999994e-119   NTclustered gi|242375189|emb|FP101308.1| 38705 g8531 i0 95.652 1.00363636363636 276 11 100 1 1 275 17 292 Phyllostachys edulis cDNA clone: bphyem001j05, full insert sequence blastn 276 442 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
24747120 24747120 PRJNA554794_P_NODE_13980_length_231_cov_1.181319_g10051_i0 PRJNA554794 13980 231 1.181319 2.72884689 Micromonas pusilla 38833 Plants Plants 132 2.58e-26   NTclustered gi|303283335|ref|XM_003060913.1| 564608 g10051 i0 87.069 3.84415584415584 116 15 50 0 75 190 715 600 Micromonas pusilla CCMP1545 uncharacterized protein (MICPUCDRAFT_49684), partial mRNA blastn 888 132 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;