RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA554794" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA554794 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3071857 3071857 PRJNA554794_P_NODE_20983_length_186_cov_1.080292_g17054_i0 PRJNA554794 20983 186 1.080292 2.00934312 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 169 1.5099999999999998e-37   NTclustered gi|62910949|gb|AY925001.1| 5778 g17054 i0 97 0.763440860215054 100 3 54 0 87 186 1 100 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 142 169 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10725093 10725093 PRJNA554794_P_NODE_21229_length_183_cov_0.820896_g17300_i0 PRJNA554794 21229 183 0.820896 1.50223968 Vannella samoroda 2591203 Discosea other_Eukaryota 233 5.19e-57   NTclustered gi|1768465994|gb|MK992744.1| 2591203 g17300 i0 92.593 96.6010928961749 162 12 89 0 22 183 788 627 Vannella samoroda strain RC CCMAm 0457 clone 2 actin gene, partial cds blastn 17678 233 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella samoroda
14549995 14549995 PRJNA554794_P_NODE_9632_length_423_cov_5.860963_g2142_i1 PRJNA554794 9632 423 5.860963 24.79187349 Dictyostelium discoideum 44689 Evosea other_Eukaryota 542 1.98e-149   NTclustered gi|66805384|ref|XM_631333.1| 352472 g2142 i1 89.976 96.8841607565012 419 42 99 0 3 421 1124 706 Dictyostelium discoideum AX4 hypothetical protein (act4) mRNA, complete cds blastn 40982 542 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20923098 20923098 PRJNA554794_P_NODE_21617_length_178_cov_0.914729_g17688_i0 PRJNA554794 21617 178 0.914729 1.62821762 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 296 6.3e-76   NTclustered gi|62910949|gb|AY925001.1| 5778 g17688 i0 96.629 1.56179775280899 178 6 100 0 1 178 455 278 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 278 296 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22197802 22197802 PRJNA554794_P_NODE_20778_length_189_cov_1.207143_g16849_i0 PRJNA554794 20778 189 1.207143 2.28150027 Acytostelium subglobosum 361139 Evosea other_Eukaryota 54.7 0.005   NTclustered gi|831773671|ref|XM_012898527.1| 1410327 g16849 i0 100 0.153439153439153 29 0 15 0 149 177 551 523 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
23473398 23473398 PRJNA554794_P_NODE_4839_length_1058_cov_1.518335_g2115_i0 PRJNA554794 4839 1058 1.518335 16.0639843 Cavenderia fasciculata 261658 Evosea other_Eukaryota 606 1.8299999999999992e-168   NTclustered gi|470260760|ref|XM_004360149.1| 261658 g2115 i0 77.63 54.8412098298677 1055 198 97 23 4 1026 1049 1 Cavenderia fasciculata elongation factor 1 alpha (efaAI), partial mRNA blastn 58022 606 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
24747102 24747102 PRJNA554794_P_NODE_10320_length_376_cov_1.311927_g6431_i0 PRJNA554794 10320 376 1.311927 4.93284552 Ripella tribonemae 2047823 Discosea other_Eukaryota 606 6.089999999999998e-169   NTclustered gi|1269228471|gb|MF683596.1| 2047823 g6431 i0 97.479 92.4148936170213 357 5 94 4 23 376 676 1031 Ripella tribonemae clone 22.1.14 18S ribosomal RNA gene, partial sequence blastn 34748 606 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
24747117 24747117 PRJNA554794_P_NODE_13420_length_246_cov_0.746193_g9491_i0 PRJNA554794 13420 246 0.746193 1.83563478 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 416 6.839999999999999e-112   NTclustered gi|62910949|gb|AY925001.1| 5778 g9491 i0 97.154 2.34146341463415 246 7 100 0 1 246 731 486 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 576 416 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;