RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA551951" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA551951 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6898405 6898405 PRJNA551951_S_NODE_11526_length_211_cov_1.556818_g11408_i0 PRJNA551951 11526 211 1.556818 3.28488598 Stichococcus bacillaris 37433 Plants Plants 259 1.02e-64   NTclustered gi|371782130|emb|HE610162.1| 37433 g11408 i0 91.935 127.39336492891 186 14 88 1 1 186 284 100 Stichococcus bacillaris plastid partial 23S rRNA gene, strain SAG 379-2 blastn 26880 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
16425525 16425525 PRJNA551951_S_NODE_10953_length_219_cov_2.304348_g10835_i0 PRJNA551951 10953 219 2.304348 5.04652212 Trebouxiophyceae 75966 Plants Plants 244 2.98e-60   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g10835 i0 94.375 73.3835616438356 160 8 73 1 61 219 227 68 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 16071 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
18372356 18372356 PRJNA551951_S_NODE_4495_length_423_cov_3.507732_g4380_i0 PRJNA551951 4495 423 3.507732 14.83770636 Nannochloris normandinae 926285 Plants Plants 599 1.1599999999999997e-166   NTclustered gi|922575245|gb|JQ921007.1| 926285 g4380 i0 92.417 101.042553191489 422 28 99 4 1 420 387 806 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 42741 599 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
21524935 21524935 PRJNA551951_S_NODE_13337_length_187_cov_1.828947_g13219_i0 PRJNA551951 13337 187 1.828947 3.42013089 root 1 Root_unresolved Root_unresolved 54.7 0.004   NTclustered gi|2082264632|ref|XM_043069963.1| 3055 g13219 i0 100 0.32620320855615 29 0 16 0 96 124 432 460 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_14g610200v5), mRNA blastn 61 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;