RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA551951" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA551951 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5624474 5624474 PRJNA551951_S_NODE_6545_length_328_cov_8.000000_g6427_i0 PRJNA551951 6545 328 8 26.24 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 54.7 0.009   NTclustered gi|2874253698|emb|OY969424.1| 1672391 g6427 i0 100 0.259146341463415 29 0 9 0 276 304 1413585 1413613 MAG: uncultured Chloroflexia bacterium isolate MFD06229.bin.c.1 genome assembly, chromosome: 1 blastn 85 54.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
6898587 6898587 PRJNA551951_S_NODE_866_length_980_cov_56.206349_g809_i0 PRJNA551951 866 980 56.206349 550.8222202 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 791 0   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g809 i0 82.481 191.372448979592 919 145 93 11 42 956 3496013 3495107 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 187545 791 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
23473092 23473092 PRJNA551951_S_NODE_6919_length_316_cov_1.846975_g6801_i0 PRJNA551951 6919 316 1.846975 5.836441 Chloroflexus aurantiacus 1108 Bacteria Bacteria 182 3.62e-41   NTclustered gi|163666892|gb|CP000909.1| 324602 g6801 i0 82.018 52.0791139240506 228 27 70 12 97 316 778439 778660 Chloroflexus aurantiacus J-10-fl, complete genome blastn 16457 182 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus
24746901 24746901 PRJNA551951_S_NODE_8560_length_269_cov_1.538462_g8442_i0 PRJNA551951 8560 269 1.538462 4.13846278 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 198 2.99e-46   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g8442 i0 81.818 74.0557620817844 242 39 88 4 18 254 273467 273708 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 19921 198 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;