RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4343425 4343425 PRJNA550047_P_NODE_430964_length_253_cov_11.311111_g428992_i0 PRJNA550047 430964 253 11.311111 28.61711083 Pyrobaculum aerophilum 13773 Archaea Archaea 222 1.65e-53   NTclustered gi|18308975|gb|AE009441.1| 178306 g428992 i0 99.187 0.486166007905138 123 1 49 0 131 253 1197078 1197200 Pyrobaculum aerophilum str. IM2, complete genome blastn 123 222 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
10721580 10721580 PRJNA550047_P_NODE_521229_length_223_cov_11.146667_g519256_i0 PRJNA550047 521229 223 11.146667 24.85706741 Pyrobaculum aerophilum 13773 Archaea Archaea 377 2.88e-100   NTclustered gi|18308975|gb|AE009441.1| 178306 g519256 i0 97.309 1 223 5 100 1 1 223 1645699 1645478 Pyrobaculum aerophilum str. IM2, complete genome blastn 223 377 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
16423128 16423128 PRJNA550047_P_NODE_203413_length_337_cov_8.799242_g201451_i0 PRJNA550047 203413 337 8.799242 29.65344554 Archaea 2157 Archaea Archaea 595 1.1699999999999996e-165   NTclustered gi|47155798|gb|AY601291.1| 29281 g201451 i0 98.521 100.287833827893 338 4 100 1 1 337 21 358 Uncultured crenarchaeote clone GFS3-135i 16S ribosomal RNA gene, partial sequence blastn 33797 595 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
21524108 21524108 PRJNA550047_P_NODE_539637_length_217_cov_7.861111_g537664_i0 PRJNA550047 539637 217 7.861111 17.05861087 root 1 Root_unresolved Root_unresolved 401 1.6499999999999994e-107   NTclustered gi|373125855|gb|JN567036.1| 29281 g537664 i0 100 103 217 0 100 0 1 217 576 792 Uncultured crenarchaeote clone DDOUBD11 16S ribosomal RNA gene, partial sequence blastn 22351 401 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
25348402 25348402 PRJNA550047_P_NODE_552140_length_213_cov_5.664286_g550167_i0 PRJNA550047 552140 213 5.664286 12.06492918 Thermoproteati 1783275 Archaea Archaea 388 1.26e-103   NTclustered gi|153865719|gb|EF450813.1| 29281 g550167 i0 99.531 99.9906103286385 213 1 100 0 1 213 315 103 Uncultured crenarchaeote clone CBS16S4-1-17 16S ribosomal RNA gene, partial sequence blastn 21298 388 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;