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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
515380 515380 PRJNA550047_P_NODE_358021_length_282_cov_1.885167_g356050_i0 PRJNA550047 358021 282 1.885167 5.31617094 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 172 1.91e-38   NTclustered gi|325194231|emb|FR825088.1| 890382 g356050 i0 95.37 0.382978723404255 108 5 38 0 175 282 487 380 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 108 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
1793823 1793823 PRJNA550047_P_NODE_584762_length_202_cov_16.255814_g582789_i0 PRJNA550047 584762 202 16.255814 32.83674428 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 363 7.149999999999999e-96   NTclustered gi|325194239|emb|FR825095.1| 890382 g582789 i0 99.015 100.415841584158 203 1 100 1 1 202 1376 1174 Albugo laibachii Nc14, genomic contig CONTIG_1625_NC14_v4_1818_619 blastn 20284 363 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4343903 4343903 PRJNA550047_P_NODE_470204_length_240_cov_14.035928_g468231_i0 PRJNA550047 470204 240 14.035928 33.6862272 Peronospora trivialis 162096 SAR_Eukaryotes SAR_Eukaryotes 438 1.4199999999999995e-118   NTclustered gi|33520205|gb|AY273950.1| 162096 g468231 i0 99.583 99.7583333333333 240 1 100 0 1 240 259 20 Peronospora trivialis large subunit ribosomal RNA gene, partial sequence blastn 23942 438 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora trivialis
5620507 5620507 PRJNA550047_P_NODE_4565_length_867_cov_19.481108_g3073_i0 PRJNA550047 4565 867 19.481108 168.90120636 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 1448 0   NTclustered gi|325194231|emb|FR825088.1| 890382 g3073 i0 96.778 1.42099192618224 869 26 100 2 1 867 462 1330 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 1232 1448 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7499854 7499854 PRJNA550047_P_NODE_469266_length_241_cov_3.636905_g467293_i0 PRJNA550047 469266 241 3.636905 8.76494105 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 424 3.99e-114   NTclustered gi|2248513076|ref|NC_063796.1| 4786 g467293 i0 98.34 102 241 4 100 0 1 241 5072 5312 Phytophthora cryptogea culture CBS:418.71 mitochondrion, complete genome blastn 24582 424 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
10050063 10050063 PRJNA550047_P_NODE_448568_length_247_cov_14.321839_g446596_i0 PRJNA550047 448568 247 14.321839 35.37494233 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 436 5.279999999999999e-118   NTclustered gi|13309831|gb|AF235955.1|AF235955 134698 g446596 i0 98.381 100.04048582996 247 4 100 0 1 247 528 774 Peronospora farinosa 28S large subunit ribosomal RNA gene, partial sequence blastn 24710 440 0.990909090909091 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa
13268340 13268340 PRJNA550047_P_NODE_27891_length_433_cov_11.027778_g25969_i0 PRJNA550047 27891 433 11.027778 47.75027874 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 130 1.88e-25   NTclustered gi|325195136|emb|FR825930.1| 890382 g25969 i0 84.672 0.401847575057737 137 13 38 5 8 136 361 497 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 174 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14545190 14545190 PRJNA550047_P_NODE_42392_length_365_cov_24.246575_g40437_i0 PRJNA550047 42392 365 24.246575 88.49999875 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 510 4.76e-140   NTclustered gi|325195057|emb|FR825852.1| 890382 g40437 i0 91.87 91.6684931506849 369 24 100 5 1 365 110 476 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 33459 510 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18369714 18369714 PRJNA550047_P_NODE_571675_length_206_cov_19.609023_g569702_i0 PRJNA550047 571675 206 19.609023 40.39458738 Perofascia lepidii 184465 SAR_Eukaryotes SAR_Eukaryotes 364 2.0399999999999993e-96   NTclustered gi|90655126|gb|DQ361247.1| 184465 g569702 i0 98.544 101.665048543689 206 3 100 0 1 206 283 78 Perofascia lepidii large subunit ribosomal RNA gene, partial sequence blastn 20943 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Perofascia Perofascia lepidii
19640632 19640632 PRJNA550047_P_NODE_272656_length_299_cov_9.504425_g270687_i0 PRJNA550047 272656 299 9.504425 28.41823075 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 252 2.55e-62   NTclustered gi|325194231|emb|FR825088.1| 890382 g270687 i0 96.689 0.969899665551839 151 5 51 0 1 151 1380 1230 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 290 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
20246510 20246510 PRJNA550047_P_NODE_13296_length_547_cov_13.352321_g11452_i0 PRJNA550047 13296 547 13.352321 73.03719587 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 854 0   NTclustered gi|403181303|gb|JN635225.1| 4788 g11452 i0 94.891 100.184643510055 548 25 99 2 1 545 541 1088 Phytophthora megasperma isolate WPC1679A20 18S ribosomal RNA gene, partial sequence blastn 54801 859 0.994179278230501 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
22194603 22194603 PRJNA550047_P_NODE_550598_length_213_cov_13.150000_g548625_i0 PRJNA550047 550598 213 13.15 28.0095 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 130 8.42e-26   NTclustered gi|695423889|ref|XM_009530502.1| 67593 g548625 i0 77.725 1.88732394366197 211 47 99 0 1 211 635 845 Phytophthora sojae hypothetical protein partial mRNA blastn 402 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
22195080 22195080 PRJNA550047_P_NODE_591398_length_200_cov_16.708661_g589425_i0 PRJNA550047 591398 200 16.708661 33.417322 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 106 1.32e-18   NTclustered gi|325195233|emb|FR826028.1| 890382 g589425 i0 87.778 0.45 90 11 45 0 111 200 1 90 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 90 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
22797937 22797937 PRJNA550047_P_NODE_273918_length_299_cov_8.504425_g271949_i0 PRJNA550047 273918 299 8.504425 25.42823075 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 235 2.5699999999999996e-57   NTclustered gi|325181427|emb|FR824061.1| 890382 g271949 i0 94.702 2 151 8 100 0 1 151 114143 114293 Albugo laibachii Nc14, genomic contig CONTIG_16_NC14_v4_210924_216 blastn 598 235 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
23468202 23468202 PRJNA550047_P_NODE_391459_length_268_cov_9.051282_g389487_i0 PRJNA550047 391459 268 9.051282 24.25743576 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 100 8.64e-17   NTclustered gi|695403836|ref|XM_009525087.1| 67593 g389487 i0 89.744 2.0410447761194 78 8 29 0 191 268 259 336 Phytophthora sojae hypothetical protein mRNA blastn 547 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23470056 23470056 PRJNA550047_P_NODE_541159_length_216_cov_16.629371_g539186_i0 PRJNA550047 541159 216 16.629371 35.91944136 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 268 1.74e-67   NTclustered gi|325195233|emb|FR826028.1| 890382 g539186 i0 91.753 0.898148148148148 194 14 89 2 17 209 1 193 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 194 268 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;