RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA550047 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11995488 11995488 PRJNA550047_P_NODE_448370_length_247_cov_16.298851_g446398_i0 PRJNA550047 448370 247 16.298851 40.25816197 Trichinella spiralis 6334 Nematoda Nematoda 52.8 0.022   NTclustered gi|109716040|gb|AC188121.1| 6334 g446398 i0 96.875 0.129554655870445 32 0 13 1 194 225 103062 103092 Trichinella spiralis chromosome UNK clone TS195-46H12, complete sequence blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
15149799 15149799 PRJNA550047_P_NODE_473852_length_239_cov_9.265060_g471879_i0 PRJNA550047 473852 239 9.26506 22.1434934 Oscheius 42476 Nematoda Nematoda 442 1.0899999999999994e-119   NTclustered gi|158827543|gb|EU196009.1| 141969 g471879 i0 100 89.7824267782427 239 0 100 0 1 239 644 882 Oscheius tipulae strain CEW1 18S ribosomal RNA gene, partial sequence blastn 21458 442 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
24073730 24073730 PRJNA550047_P_NODE_4779_length_844_cov_26.974060_g3266_i0 PRJNA550047 4779 844 26.97406 227.6610664 Metazoa 33208 Nematoda Nematoda 942 0   NTclustered gi|1174020828|gb|KY887583.1| 6293 g3266 i0 99.805 81.4632701421801 514 0 81 1 1 514 1147 635 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 68755 950 0.991578947368421 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;