RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA550047 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17700479 17700479 PRJNA550047_P_NODE_95554_length_345_cov_8.871324_g93594_i0 PRJNA550047 95554 345 8.871324 30.6060678 Metazoa 33208 Echinodermata other_Eukaryota 52.8 0.033   NTclustered gi|2037984777|ref|XM_041605043.1| 7654 g93594 i0 100 0.16231884057971 28 0 8 0 14 41 157 184 PREDICTED: Lytechinus variegatus PE-PGRS family protein PE_PGRS16-like (LOC121412137), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
18366010 18366010 PRJNA550047_P_NODE_273535_length_299_cov_8.800885_g271566_i0 PRJNA550047 273535 299 8.800885 26.31464615 Acanthaster planci 133434 Echinodermata other_Eukaryota 54.7 0.008   NTclustered gi|1229180122|ref|XM_022247899.1| 133434 g271566 i0 100 0.096989966555184 29 0 10 0 113 141 1046 1018 PREDICTED: Acanthaster planci uncharacterized LOC110986205 (LOC110986205), transcript variant X1, mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;