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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Cossaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Cossaviricota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 20 ✖

analysis 1

  • blastn · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
516928 516928 PRJNA550047_P_NODE_483441_length_236_cov_5.687117_g481468_i0 PRJNA550047 483441 236 5.687117 13.42159612 Alphapapillomavirus 4 337043 Viruses Viruses 431 2.33e-116   NTclustered gi|60882|emb|X55965.1| 333753 g481468 i0 99.576 9.25423728813559 236 1 100 0 1 236 1474 1709 Human papillomavirus type 57 complete DNA blastn 2184 431 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 4
1120754 1120754 PRJNA550047_P_NODE_278101_length_299_cov_5.650442_g276132_i0 PRJNA550047 278101 299 5.650442 16.89482158 Alphapapillomavirus 333750 Viruses Viruses 542 1.35e-149   NTclustered gi|71061109|dbj|AB211993.1| 325568 g276132 i0 99.331 13.0167224080268 299 2 100 0 1 299 6855 6557 Human papillomavirus type 27b DNA, complete genome blastn 3892 547 0.990859232175503 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 4
1790217 1790217 PRJNA550047_P_NODE_288542_length_298_cov_8.804444_g286573_i0 PRJNA550047 288542 298 8.804444 26.23724312 Betapapillomavirus 5 334209 Viruses Viruses 416 8.529999999999998e-112   NTclustered gi|50253426|ref|NC_005134.2| 247269 g286573 i0 91.456 6.13422818791946 316 7 99 1 3 298 1290 1605 Human papillomavirus type 96, complete genome blastn 1828 416 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 5
1791540 1791540 PRJNA550047_P_NODE_395662_length_266_cov_18.497409_g393690_i0 PRJNA550047 395662 266 18.497409 49.20310794 Human papillomavirus type 222 2200959 Viruses Viruses 486 5.629999999999999e-133   NTclustered gi|1389447876|gb|MH172379.1| 2200959 g393690 i0 99.624 3.13157894736842 266 1 100 0 1 266 5841 5576 Human papillomavirus type 222 isolate CT17, complete genome blastn 833 486 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 222
5620201 5620201 PRJNA550047_P_NODE_433505_length_252_cov_13.033520_g431533_i0 PRJNA550047 433505 252 13.03352 32.8444704 Human papillomavirus type 222 2200959 Viruses Viruses 416 7.029999999999999e-112   NTclustered gi|1389447876|gb|MH172379.1| 2200959 g431533 i0 96.429 2.74206349206349 252 9 100 0 1 252 4419 4168 Human papillomavirus type 222 isolate CT17, complete genome blastn 691 416 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 222
8166000 8166000 PRJNA550047_P_NODE_166647_length_345_cov_3.621324_g164687_i0 PRJNA550047 166647 345 3.621324 12.4935678 Alphapapillomavirus 4 337043 Viruses Viruses 270 8.28e-68   NTclustered gi|396964|emb|X74473.1| 333752 g164687 i0 99.329 4.17391304347826 149 1 87 0 197 345 4261 4113 Human papillomavirus type 27 genomic DNA blastn 1440 270 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 4
8169266 8169266 PRJNA550047_P_NODE_436847_length_251_cov_10.494382_g434875_i0 PRJNA550047 436847 251 10.494382 26.34089882 Betapapillomavirus 1 337051 Viruses Viruses 453 5.34e-123   NTclustered gi|396940|emb|X74470.1| 10608 g434875 i0 99.203 1 251 2 100 0 1 251 5488 5738 Human papillomavirus type 19 genomic DNA blastn 251 453 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
8169461 8169461 PRJNA550047_P_NODE_452467_length_246_cov_8.144509_g450494_i0 PRJNA550047 452467 246 8.144509 20.03549214 Betapapillomavirus 2 333924 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|1020186|gb|U31781.1|HPU31781 37955 g450494 i0 100 12.280487804878 246 0 100 0 1 246 2511 2756 Human papillomavirus type 23, complete genome blastn 3021 455 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 2
9442277 9442277 PRJNA550047_P_NODE_235248_length_301_cov_3.842105_g233279_i0 PRJNA550047 235248 301 3.842105 11.56473605 Gammapapillomavirus 13 1513258 Viruses Viruses 270 7.0999999999999986e-68   NTclustered gi|1273499340|gb|MF588721.1| 1513258 g233279 i0 98.684 2.51495016611296 152 2 100 0 150 301 6121 5970 Gammapapillomavirus 13 isolate Gamma13_EV03c45, complete genome blastn 757 270 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 13
12600785 12600785 PRJNA550047_P_NODE_487470_length_234_cov_17.639752_g485497_i0 PRJNA550047 487470 234 17.639752 41.27701968 Gammapapillomavirus 325455 Viruses Viruses 433 6.41e-117   NTclustered gi|1273499700|gb|MF588777.1| 1513264 g485497 i0 100 6 234 0 100 0 1 234 1371 1604 Gammapapillomavirus 19 isolate iGamma19_m815c46 E2 (E2) and E4 (E4) genes, complete cds blastn 1404 433 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 19
13268049 13268049 PRJNA550047_P_NODE_25591_length_447_cov_10.422460_g23677_i0 PRJNA550047 25591 447 10.42246 46.5883962 Human papillomavirus type 222 2200959 Viruses Viruses 516 1.28e-141   NTclustered gi|1389447876|gb|MH172379.1| 2200959 g23677 i0 99.645 1.95525727069351 282 1 98 0 166 447 4794 5075 Human papillomavirus type 222 isolate CT17, complete genome blastn 874 516 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus type 222
13271395 13271395 PRJNA550047_P_NODE_520671_length_223_cov_15.306667_g518698_i0 PRJNA550047 520671 223 15.306667 34.13386741 Alphapapillomavirus 2 337039 Viruses Viruses 412 7.88e-111   NTclustered gi|9627257|ref|NC_001576.1| 333759 g518698 i0 100 11.085201793722 223 0 100 0 1 223 730 508 Human papillomavirus type 10 genomic DNA blastn 2472 412 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
13875614 13875614 PRJNA550047_P_NODE_46811_length_349_cov_15.373188_g44852_i0 PRJNA550047 46811 349 15.373188 53.65242612 Viruses 10239 Viruses Viruses 606 5.61e-169   NTclustered gi|1559669707|gb|MH777252.2| 10566 g44852 i0 98 6.61604584527221 350 5 100 2 1 349 1500 1848 MAG: Human papillomavirus isolate HPV-mSK_110, complete genome blastn 2309 612 0.990196078431373 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
17094977 17094977 PRJNA550047_P_NODE_519354_length_224_cov_6.264901_g517381_i0 PRJNA550047 519354 224 6.264901 14.03337824 Betapapillomavirus 3 334207 Viruses Viruses 390 3.71e-104   NTclustered gi|2183144171|gb|OL700030.1| 696746 g517381 i0 100 2.27232142857143 211 0 94 0 14 224 1 211 Human papillomavirus 115 isolate XJ-ZS137-1, complete genome blastn 509 390 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 3
17698835 17698835 PRJNA550047_P_NODE_293514_length_298_cov_4.226667_g291545_i0 PRJNA550047 293514 298 4.226667 12.59546766 Gammapapillomavirus 325455 Viruses Viruses 534 2.26e-147   NTclustered gi|1480688964|gb|MH777338.1| 10566 g291545 i0 98.993 2.53355704697987 298 3 100 0 1 298 170 467 MAG: Human papillomavirus isolate HPV-mSK_196, complete genome blastn 755 534 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
20915124 20915124 PRJNA550047_P_NODE_15697_length_522_cov_9.280624_g13822_i0 PRJNA550047 15697 522 9.280624 48.44485728 Human papillomavirus 10566 Viruses Viruses 311 7.65e-80   NTclustered gi|1559669707|gb|MH777252.2| 10566 g13822 i0 100 5.65134099616858 168 0 90 0 178 345 2993 3160 MAG: Human papillomavirus isolate HPV-mSK_110, complete genome blastn 2950 311 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
20917773 20917773 PRJNA550047_P_NODE_37737_length_384_cov_11.935691_g35790_i0 PRJNA550047 37737 384 11.935691 45.83305344 Gammapapillomavirus 19 1513264 Viruses Viruses 368 3.1999999999999993e-97   NTclustered gi|1273499700|gb|MF588777.1| 1513264 g35790 i0 99.505 2.76041666666667 202 1 92 0 2 203 1683 1884 Gammapapillomavirus 19 isolate iGamma19_m815c46 E2 (E2) and E4 (E4) genes, complete cds blastn 1060 368 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 19
22194178 22194178 PRJNA550047_P_NODE_516038_length_225_cov_8.401316_g514065_i0 PRJNA550047 516038 225 8.401316 18.902961 Betapapillomavirus 2 333924 Viruses Viruses 366 6.29e-97   NTclustered gi|1020178|gb|U31780.1|HPU31780 37954 g514065 i0 96 15.9111111111111 225 9 100 0 1 225 2725 2501 Human papillomavirus type 22, complete genome blastn 3580 366 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 2
23468480 23468480 PRJNA550047_P_NODE_414639_length_259_cov_10.870968_g412667_i0 PRJNA550047 414639 259 10.870968 28.15580712 Betapapillomavirus 1 337051 Viruses Viruses 401 2.0299999999999993e-107   NTclustered gi|1020194|gb|U31782.1|HPU31782 37956 g412667 i0 94.922 4.3011583011583 256 13 99 0 3 258 387 642 Human papillomavirus type 24, complete genome blastn 1114 401 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
23470491 23470491 PRJNA550047_P_NODE_576979_length_205_cov_6.780303_g575006_i0 PRJNA550047 576979 205 6.780303 13.89962115 Gammapapillomavirus 22 1961679 Viruses Viruses 357 3.3899999999999996e-94   NTclustered gi|1273499483|gb|MF588739.1| 1961679 g575006 i0 98.049 2 205 4 100 0 1 205 4162 4366 Gammapapillomavirus 22 isolate Gamma22_TVMBSWc141, complete genome blastn 410 357 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;