RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
516703 516703 PRJNA550047_P_NODE_46501_length_350_cov_16.386282_g44543_i0 PRJNA550047 46501 350 16.386282 57.351987 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 239 2.3600000000000003e-58   NTclustered gi|2651357791|gb|PP174306.1| 41631 g44543 i0 94.771 1.48 153 8 85 0 2 154 3283 3435 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 518 239 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
1791763 1791763 PRJNA550047_P_NODE_414342_length_259_cov_13.295699_g412370_i0 PRJNA550047 414342 259 13.295699 34.43586041 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 67.6 8.42e-7   NTclustered gi|584458856|gb|KJ159078.1| 5949 g412370 i0 97.436 15.969111969112 39 1 15 0 221 259 829 867 Stylonychia lemnae histone variant H3.4 (HIS34) gene, complete cds; macronuclear blastn 4136 67.6 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
5616198 5616198 PRJNA550047_P_NODE_105385_length_345_cov_7.955882_g103425_i0 PRJNA550047 105385 345 7.955882 27.4477929 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.033   NTclustered gi|156539283|gb|EU119282.1| 94289 g103425 i0 100 0.16231884057971 28 0 8 0 318 345 28 1 Sterkiella histriomuscorum strain BA clone 14.8 telomeric repeat genomic sequences, complete sequence; macronuclear blastn 56 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
7499395 7499395 PRJNA550047_P_NODE_37066_length_387_cov_9.818471_g35121_i0 PRJNA550047 37066 387 9.818471 37.99748277 root 1 Root_unresolved Root_unresolved 69.4 3.67e-7   NTclustered gi|174257|gb|M98372.1|DDNRRLSB 5997 g35121 i0 100 9.18346253229974 37 0 10 0 351 387 1 37 Didinium nasutum large subunit ribosomal RNA, internal domain blastn 3554 69.4 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida Didiniidae Didinium Didinium nasutum
8168160 8168160 PRJNA550047_P_NODE_344187_length_287_cov_10.948598_g342217_i0 PRJNA550047 344187 287 10.948598 31.42247626 Euplotes raikovi 5938 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.7e-4   NTclustered gi|1446116416|gb|MH423860.1| 5938 g342217 i0 97.143 0.48780487804878 35 0 12 1 1 34 1012 978 Euplotes raikovi Er-22 pheromone gene, complete cds; macronuclear blastn 140 58.4 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes raikovi
8170503 8170503 PRJNA550047_P_NODE_544627_length_215_cov_12.880282_g542654_i0 PRJNA550047 544627 215 12.880282 27.6926063 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.13e-4   NTclustered gi|47176197|gb|AY617777.1| 94289 g542654 i0 94.872 0.181395348837209 39 1 18 1 178 215 39 1 Sterkiella histriomuscorum clone UGC1O0005_J07_F genomic sequence blastn 39 60.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
9442507 9442507 PRJNA550047_P_NODE_253088_length_300_cov_7.859031_g251119_i0 PRJNA550047 253088 300 7.859031 23.577093 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|47175938|gb|AY617518.1| 94289 g251119 i0 100 0.0933333333333333 28 0 9 0 273 300 28 1 Sterkiella histriomuscorum clone UGC1O0002_P06_F genomic sequence blastn 28 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
9446608 9446608 PRJNA550047_P_NODE_58928_length_345_cov_15.393382_g56968_i0 PRJNA550047 58928 345 15.393382 53.1071679 Pseudokeronopsis erythrina 1230127 SAR_Eukaryotes SAR_Eukaryotes 141 6.77e-29   NTclustered gi|2889127627|gb|PQ685978.1| 1230127 g56968 i0 92.784 1.75942028985507 97 7 28 0 1 97 1418 1322 Pseudokeronopsis erythrina isolate CUI1 mitochondrion, partial genome blastn 607 141 1 Eukaryota Sar   Ciliophora Spirotrichea Urostylida Pseudokeronopsidae Pseudokeronopsis Pseudokeronopsis erythrina
10718013 10718013 PRJNA550047_P_NODE_224969_length_301_cov_8.714912_g223000_i0 PRJNA550047 224969 301 8.714912 26.23188512 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|47176114|gb|AY617694.1| 94289 g223000 i0 100 0.0930232558139535 28 0 9 0 1 28 1 28 Sterkiella histriomuscorum clone UGC1O0004_M12_R genomic sequence blastn 28 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
13268284 13268284 PRJNA550047_P_NODE_274291_length_299_cov_8.234513_g272322_i0 PRJNA550047 274291 299 8.234513 24.62119387 Euplotes octocarinatus 2716877 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|332717322|gb|JF513054.1| 2716877 g272322 i0 94.595 0.123745819397993 37 1 12 1 263 299 596 631 Euplotes octocarinatus acidic ribosomal protein P2 gene, complete cds; macronuclear blastn 37 56.5 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes octocarinatus
13269534 13269534 PRJNA550047_P_NODE_369511_length_277_cov_6.137255_g367540_i0 PRJNA550047 369511 277 6.137255 17.00019635 Euplotes octocarinatus 2716877 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|307949532|gb|HM371135.1| 2716877 g367540 i0 100 0.101083032490975 28 0 10 0 1 28 9 36 Euplotes octocarinatus Rab-like GTPase 2 (RabL2) gene, complete cds; macronuclear blastn 28 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes octocarinatus
13272763 13272763 PRJNA550047_P_NODE_84591_length_345_cov_10.095588_g82631_i0 PRJNA550047 84591 345 10.095588 34.8297786 Euplotes octocarinatus 2716877 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.033   NTclustered gi|307949530|gb|HM371134.1| 2716877 g82631 i0 100 0.0811594202898551 28 0 8 0 1 28 675 648 Euplotes octocarinatus Rab GTPase 2-like protein gene, complete cds; macronuclear blastn 28 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes octocarinatus
15821266 15821266 PRJNA550047_P_NODE_69453_length_345_cov_12.485294_g67493_i0 PRJNA550047 69453 345 12.485294 43.0742643 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|47175905|gb|AY617485.1| 94289 g67493 i0 100 0.0869565217391304 30 0 9 0 1 30 1183 1154 Sterkiella histriomuscorum clone UGC1O0002_M04_R genomic sequence blastn 30 56.5 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
17092277 17092277 PRJNA550047_P_NODE_303534_length_297_cov_4.071429_g301565_i0 PRJNA550047 303534 297 4.071429 12.09214413 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|47176459|gb|AY618039.1| 94289 g301565 i0 100 0.0976430976430976 29 0 10 0 1 29 1 29 Sterkiella histriomuscorum clone UGC1O0002_I18_F genomic sequence blastn 29 54.7 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
18368384 18368384 PRJNA550047_P_NODE_460115_length_244_cov_0.906433_g458142_i0 PRJNA550047 460115 244 0.906433 2.21169652 Sterkiella cavicola 742176 SAR_Eukaryotes SAR_Eukaryotes 366 6.92e-97   NTclustered gi|1743241|emb|Y10035.1| 742176 g458142 i0 93.827 98.9467213114754 243 15 99 0 2 244 1130 888 H.cavicola gene encoding alpha-tubulin blastn 24143 366 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella cavicola
20915827 20915827 PRJNA550047_P_NODE_21437_length_476_cov_10.344913_g19535_i0 PRJNA550047 21437 476 10.344913 49.24178588 Oxytricha trifallax 1172189 SAR_Eukaryotes SAR_Eukaryotes 169 4.409999999999999e-37   NTclustered gi|359817572|gb|JN383843.1| 1172189 g19535 i0 89.552 3.63235294117647 134 12 28 2 2 134 44649 44517 Oxytricha trifallax mitochondrion blastn 1729 169 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha trifallax
20915855 20915855 PRJNA550047_P_NODE_216717_length_301_cov_15.311404_g214748_i0 PRJNA550047 216717 301 15.311404 46.08732604 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|47175744|gb|AY617324.1| 94289 g214748 i0 100 0.0930232558139535 28 0 9 0 273 300 28 1 Sterkiella histriomuscorum clone UGC1O0001_M12_R genomic sequence blastn 28 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;