RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15821172 15821172 PRJNA550047_P_NODE_6273_length_736_cov_11.049774_g4659_i0 PRJNA550047 6273 736 11.049774 81.32633664 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 492 3.6599999999999993e-134   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g4659 i0 96.622 39.5217391304348 296 10 97 0 162 457 890606 890901 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 29088 492 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
19643306 19643306 PRJNA550047_P_NODE_484716_length_235_cov_15.339506_g482743_i0 PRJNA550047 484716 235 15.339506 36.0478391 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 226 1.1699999999999999e-54   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g482743 i0 84.388 2.01702127659574 237 29 99 8 1 233 890300 890068 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 474 226 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
22189845 22189845 PRJNA550047_P_NODE_156858_length_345_cov_4.279412_g154898_i0 PRJNA550047 156858 345 4.279412 14.7639714 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 259 1.7900000000000002e-64   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g154898 i0 97.987 0.869565217391304 149 3 87 0 1 149 975965 976113 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 300 259 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;