RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA550047 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17095717 17095717 PRJNA550047_P_NODE_580194_length_204_cov_6.435115_g578221_i0 PRJNA550047 580194 204 6.435115 13.1276346 candidate division SR1 bacterium Aalborg_AAW-1 1643353 Bacteria Bacteria 126 1.03e-24   NTclustered gi|821340791|gb|CP011268.1| 1643353 g578221 i0 89.109 2.25980392156863 101 11 50 0 104 204 327154 327054 Candidate division SR1 bacterium Aalborg_AAW-1 chromosome, complete genome blastn 461 126 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium Aalborg_AAW-1
24741150 24741150 PRJNA550047_P_NODE_328700_length_292_cov_16.794521_g326730_i0 PRJNA550047 328700 292 16.794521 49.04000132 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 340 5.1599999999999996e-89   NTclustered gi|563351663|gb|CP006913.1| 1394709 g326730 i0 87.931 322.188356164384 290 33 99 2 4 292 125478 125766 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 94079 340 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;