RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA550047 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13268901 13268901 PRJNA550047_P_NODE_320691_length_294_cov_9.090498_g318721_i0 PRJNA550047 320691 294 9.090498 26.72606412 Cyclonatronum proteinivorum 1457365 Bacteria Bacteria 353 6.68e-93   NTclustered gi|1440892538|gb|CP027806.1| 1457365 g318721 i0 88.475 200.591836734694 295 31 100 2 1 294 1021358 1021066 Candidatus Cyclonatronum proteinivorum strain Omega chromosome, complete genome blastn 58974 353 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Cyclonatronaceae Cyclonatronum Cyclonatronum proteinivorum
20919600 20919600 PRJNA550047_P_NODE_523137_length_222_cov_21.040268_g521164_i0 PRJNA550047 523137 222 21.040268 46.70939496 Balneola sp. 2024824 Bacteria Bacteria 255 1.4e-63   NTclustered gi|2021960826|gb|CP051255.1| 2024824 g521164 i0 87.783 396.977477477477 221 23 99 3 2 222 2621510 2621726 MAG: Balneola sp. isolate EhC07 chromosome blastn 88129 255 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp.
23465966 23465966 PRJNA550047_P_NODE_206279_length_325_cov_19.503968_g204311_i0 PRJNA550047 206279 325 19.503968 63.387896 Gracilimonas sediminicola 2952158 Bacteria Bacteria 315 3.5299999999999993e-81   NTclustered gi|2870278968|gb|CP175953.1| 2952158 g204311 i0 84.615 611.587692307692 325 40 99 9 4 325 580 897 MAG: Gracilimonas sediminicola isolate MAG3 chromosome, complete genome blastn 198766 315 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas sediminicola
24742700 24742700 PRJNA550047_P_NODE_450240_length_247_cov_4.540230_g448268_i0 PRJNA550047 450240 247 4.54023 11.2143681 Balneolaceae bacterium 2053516 Bacteria Bacteria 139 1.67e-28   NTclustered gi|2626222457|emb|OY829281.1| 2053516 g448268 i0 88.136 101.65991902834 118 12 48 2 26 143 1783747 1783862 MAG: Balneolaceae bacterium isolate c63fa63d-abcb-44aa-a049-ecdd770e9aed genome assembly, chromosome: 1 blastn 25110 139 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae   Balneolaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;