RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1121709 1121709 PRJNA550047_P_NODE_477181_length_238_cov_7.036364_g475208_i0 PRJNA550047 477181 238 7.036364 16.74654632 Fimbriimonas 1005038 Bacteria Bacteria 372 1.44e-98   NTclustered gi|663071213|gb|CP007139.1| 661478 g475208 i0 95.299 140.31512605042 234 11 98 0 5 238 27837 28070 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 33395 372 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
6225617 6225617 PRJNA550047_P_NODE_5245_length_800_cov_9.141678_g3683_i0 PRJNA550047 5245 800 9.141678 73.133424 Fimbriimonas 1005038 Bacteria Bacteria 1020 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g3683 i0 89.987 219.56875 789 69 99 5 5 792 28225 29004 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 175655 1020 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
13271896 13271896 PRJNA550047_P_NODE_559151_length_210_cov_17.985401_g557178_i0 PRJNA550047 559151 210 17.985401 37.7693421 Armatimonadota bacterium 2033014 Bacteria Bacteria 113 8.33e-21   NTclustered gi|2621703062|emb|OY760504.1| 2033014 g557178 i0 78.378 127.619047619048 185 32 87 6 1 182 2408953 2409132 MAG: Armatimonadota bacterium isolate be0b92b7-bbec-405b-9e81-a5dbe9f1ff7a genome assembly, chromosome: 1 blastn 26800 113 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
15148542 15148542 PRJNA550047_P_NODE_205732_length_328_cov_7.501961_g203764_i0 PRJNA550047 205732 328 7.501961 24.60643208 Fimbriimonas 1005038 Bacteria Bacteria 409 1.5899999999999998e-109   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g203764 i0 89.506 742.378048780488 324 32 98 2 6 328 1687578 1687900 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 243500 409 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
17093507 17093507 PRJNA550047_P_NODE_400994_length_264_cov_15.759162_g399022_i0 PRJNA550047 400994 264 15.759162 41.60418768 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 316 7.75e-82   NTclustered gi|2874254000|emb|OY970325.1| 157466 g399022 i0 88.506 207.356060606061 261 30 99 0 2 262 1304648 1304388 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 54742 316 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
23468830 23468830 PRJNA550047_P_NODE_440319_length_250_cov_7.937853_g438347_i0 PRJNA550047 440319 250 7.937853 19.8446325 Capsulimonas corticalis 2219043 Bacteria Bacteria 307 4.3800000000000005e-79   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g438347 i0 89.328 887.68 253 16 100 6 1 250 593812 593568 Capsulimonas corticalis AX-7 DNA, complete genome blastn 221920 307 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
23470514 23470514 PRJNA550047_P_NODE_578679_length_204_cov_13.877863_g576706_i0 PRJNA550047 578679 204 13.877863 28.31084052 Capsulimonas corticalis 2219043 Bacteria Bacteria 106 1.35e-18   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g576706 i0 77.907 3.74509803921569 172 37 84 1 2 173 594082 593912 Capsulimonas corticalis AX-7 DNA, complete genome blastn 764 106 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
25347339 25347339 PRJNA550047_P_NODE_325280_length_293_cov_11.350000_g323310_i0 PRJNA550047 325280 293 11.35 33.2555 Fimbriimonas 1005038 Bacteria Bacteria 536 6.149999999999998e-148   NTclustered gi|663071213|gb|CP007139.1| 661478 g323310 i0 99.659 178.20819112628 293 1 100 0 1 293 27381 27089 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 52215 536 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;