RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_phylum = "Abditibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA550047 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5622376 5622376 PRJNA550047_P_NODE_7065_length_693_cov_15.803226_g5403_i0 PRJNA550047 7065 693 15.803226 109.51635618 Abditibacteriota bacterium 2783868 Bacteria Bacteria 518 5.67e-142   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g5403 i0 86.307 309.005772005772 482 59 69 7 210 688 2851210 2851687 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 214141 518 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
9442581 9442581 PRJNA550047_P_NODE_259348_length_300_cov_5.392070_g257379_i0 PRJNA550047 259348 300 5.39207 16.17621 Abditibacteriota bacterium 2783868 Bacteria Bacteria 165 3.44e-36   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g257379 i0 93.636 102 110 7 37 0 151 260 2852038 2851929 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 30600 165 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
13268637 13268637 PRJNA550047_P_NODE_301731_length_297_cov_6.321429_g299762_i0 PRJNA550047 301731 297 6.321429 18.77464413 Abditibacteriota bacterium 2783868 Bacteria Bacteria 219 2.57e-52   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g299762 i0 92.715 0.508417508417508 151 11 51 0 2 152 2431857 2432007 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 151 219 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
19641239 19641239 PRJNA550047_P_NODE_320296_length_294_cov_10.099548_g318326_i0 PRJNA550047 320296 294 10.099548 29.69267112 Abditibacteriota bacterium 2783868 Bacteria Bacteria 300 8.82e-77   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g318326 i0 86.909 367.772108843537 275 27 91 8 1 269 2852514 2852243 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 108125 300 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
20918435 20918435 PRJNA550047_P_NODE_4277_length_901_cov_6.851449_g2814_i0 PRJNA550047 4277 901 6.851449 61.73155549 Abditibacteriota bacterium 2783868 Bacteria Bacteria 363 3.7e-95   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g2814 i0 95.964 147.623751387347 223 9 88 0 677 899 2851262 2851040 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 133009 363 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
22193734 22193734 PRJNA550047_P_NODE_479678_length_237_cov_9.109756_g477705_i0 PRJNA550047 479678 237 9.109756 21.59012172 Abditibacteriota bacterium 2783868 Bacteria Bacteria 339 1.4599999999999998e-88   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g477705 i0 92.405 215.936708860759 237 18 100 0 1 237 2851888 2851652 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 51177 339 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;