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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA550047" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA550047 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4949801 4949801 PRJNA550047_P_NODE_469304_length_241_cov_3.386905_g467331_i0 PRJNA550047 469304 241 3.386905 8.16244105 Actinomycetota 201174 Bacteria Bacteria 429 8.58e-116   NTclustered gi|78183527|dbj|AB239012.1| 34034 g467331 i0 98.755 104.04979253112 241 3 100 0 1 241 36 276 Uncultured delta proteobacterium gene for 16S rRNA, partial sequence, clone: BJS81-068 blastn 25076 429 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
6895590 6895590 PRJNA550047_P_NODE_546306_length_215_cov_4.943662_g544333_i0 PRJNA550047 546306 215 4.943662 10.6288733 uncultured delta proteobacterium 34034 Bacteria Bacteria 209 1.06e-49   NTclustered gi|2874253999|emb|OY970324.1| 34034 g544333 i0 91.946 57.4883720930233 149 12 69 0 1 149 1657673 1657821 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 12360 209 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
9446992 9446992 PRJNA550047_P_NODE_76408_length_345_cov_11.253676_g74448_i0 PRJNA550047 76408 345 11.253676 38.8251822 uncultured delta proteobacterium 34034 Bacteria Bacteria 171 8.64e-38   NTclustered gi|2874253999|emb|OY970324.1| 34034 g74448 i0 89.051 31.3884057971014 137 15 40 0 203 339 32979 32843 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 10829 171 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11993743 11993743 PRJNA550047_P_NODE_308570_length_296_cov_7.394619_g306601_i0 PRJNA550047 308570 296 7.394619 21.88807224 uncultured delta proteobacterium 34034 Bacteria Bacteria 95.3 4.5e-15   NTclustered gi|2874253659|emb|OY969087.1| 34034 g306601 i0 91.304 0.233108108108108 69 6 23 0 158 226 1030076 1030144 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 69 95.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11993930 11993930 PRJNA550047_P_NODE_324210_length_293_cov_18.218182_g322240_i0 PRJNA550047 324210 293 18.218182 53.37927326 Persicimonas caeni 2292766 Bacteria Bacteria 100 9.57e-17   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g322240 i0 75.676 8.38566552901024 222 42 74 11 38 253 6198821 6198606 Persicimonas caeni strain YN101 chromosome blastn 2457 100 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
17090939 17090939 PRJNA550047_P_NODE_188834_length_344_cov_11.771218_g186873_i0 PRJNA550047 188834 344 11.771218 40.49298992 uncultured delta proteobacterium 34034 Bacteria Bacteria 108 6.85e-19   NTclustered gi|2874253659|emb|OY969087.1| 34034 g186873 i0 80.42 12.4825581395349 143 26 41 2 195 336 5759525 5759666 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 4294 108 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
21522986 21522986 PRJNA550047_P_NODE_315517_length_295_cov_7.027027_g313548_i0 PRJNA550047 315517 295 7.027027 20.72972965 Bacteria 2 Bacteria Bacteria 121 7.4e-23   NTclustered gi|2874253674|emb|OY969108.1| 34034 g313548 i0 83.088 115.728813559322 136 19 45 4 1 134 1542230 1542097 MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 blastn 34140 121 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
22195725 22195725 PRJNA550047_P_NODE_93018_length_345_cov_9.128676_g91058_i0 PRJNA550047 93018 345 9.128676 31.4939322 uncultured delta proteobacterium 34034 Bacteria Bacteria 279 1.38e-70   NTclustered gi|151353320|gb|EF666029.1| 34034 g91058 i0 100 62.1304347826087 151 0 88 0 1 151 300 450 Uncultured delta proteobacterium clone GASP-MB3W3_F10 16S ribosomal RNA gene, partial sequence blastn 21435 279 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;