RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA549880" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA549880 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1787282 1787282 PRJNA549880_P_NODE_13222_length_246_cov_0.890173_g13129_i0 PRJNA549880 13222 246 0.890173 2.18982558 Trentepohlia odorata 2576626 Plants Plants 449 6.74e-122   NTclustered gi|1707505678|ref|NC_043776.1| 2576626 g13129 i0 99.593 2.34959349593496 246 1 100 0 1 246 182360 182115 Trentepohlia odorata chloroplast, complete genome blastn 578 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia odorata
5615668 5615668 PRJNA549880_P_NODE_14585_length_243_cov_0.905882_g14492_i0 PRJNA549880 14585 243 0.905882 2.20129326 Trentepohlia odorata 2576626 Plants Plants 449 6.65e-122   NTclustered gi|1707505678|ref|NC_043776.1| 2576626 g14492 i0 100 34.8765432098765 243 0 100 0 1 243 183895 183653 Trentepohlia odorata chloroplast, complete genome blastn 8475 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia odorata
8164647 8164647 PRJNA549880_P_NODE_12587_length_247_cov_0.885057_g12494_i0 PRJNA549880 12587 247 0.885057 2.18609079 Trentepohlia odorata 2576626 Plants Plants 457 4.05e-124   NTclustered gi|1707505678|ref|NC_043776.1| 2576626 g12494 i0 100 1 247 0 100 0 1 247 276469 276715 Trentepohlia odorata chloroplast, complete genome blastn 247 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia odorata
24738019 24738019 PRJNA549880_P_NODE_7280_length_295_cov_4.432432_g7187_i0 PRJNA549880 7280 295 4.432432 13.0756744 Micromonas commoda 296587 Plants Plants 156 2.03e-33   NTclustered gi|255072468|ref|XM_002499863.1| 296587 g7187 i0 83.951 16.8305084745763 162 26 55 0 128 289 191 30 Micromonas commoda predicted protein mRNA blastn 4965 156 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;