RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA549880" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA549880 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8164734 8164734 PRJNA549880_P_NODE_2167_length_488_cov_1.566265_g2074_i0 PRJNA549880 2167 488 1.566265 7.6433732 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 265 5.619999999999999e-66   NTclustered gi|2795059860|ref|XM_067943008.1| 4785 g2074 i0 77.803 14.9815573770492 446 87 90 12 1 440 235 674 Phytophthora cinnamomi 40S ribosomal protein S3a (IUM83_18029), partial mRNA blastn 7311 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13265722 13265722 PRJNA549880_P_NODE_14811_length_243_cov_0.876471_g14718_i0 PRJNA549880 14811 243 0.876471 2.12982453 Gymnophrys sp. ATCC 50923 646463 SAR_Eukaryotes SAR_Eukaryotes 204 5.71e-48   NTclustered gi|302026148|gb|GQ377646.1| 646463 g14718 i0 82.083 92.8930041152263 240 41 98 2 1 239 479 717 Gymnophrys sp. ATCC 50923 beta-tubulin (Btub) gene, partial cds blastn 22573 204 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys sp. ATCC 50923

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;