RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA547066" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA547066 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6223152 6223152 PRJNA547066_P_NODE_3325_length_237_cov_3.490099_g3231_i0 PRJNA547066 3325 237 3.490099 8.27153463 Navicula 50949 SAR_Eukaryotes SAR_Eukaryotes 427 3.03e-115   NTclustered gi|18698478|gb|AF417679.1| 186032 g3231 i0 99.573 98.084388185654 234 1 99 0 1 234 131 364 Navicula cf. erifuga strain Navicula large subunit ribosomal RNA gene, partial sequence blastn 23246 429 0.995337995337995 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula cf. erifuga
8164400 8164400 PRJNA547066_P_NODE_4327_length_191_cov_5.820513_g4233_i0 PRJNA547066 4327 191 5.820513 11.11717983 Pustula tragopogonis 572139 SAR_Eukaryotes SAR_Eukaryotes 353 4.02e-93   NTclustered gi|67090806|gb|DQ007498.1| 572139 g4233 i0 100 98 191 0 100 0 1 191 37 227 Albugo tragopogonis isolate F12 large subunit ribosomal RNA gene, partial sequence blastn 18718 353 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Pustula Pustula tragopogonis
8772509 8772509 PRJNA547066_P_NODE_5007_length_173_cov_1.014493_g4913_i0 PRJNA547066 5007 173 1.014493 1.75507289 root 1 Root_unresolved Root_unresolved 292 7.87e-75   NTclustered gi|10782|emb|X54004.1| 5908 g4913 i0 97.11 10.8092485549133 173 5 100 0 1 173 2394 2566 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 1870 292 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
11322575 11322575 PRJNA547066_P_NODE_4649_length_182_cov_1.034014_g4555_i0 PRJNA547066 4649 182 1.034014 1.88190548 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 148 1.9199999999999999e-31   NTclustered gi|2632235299|gb|OR922681.1| 43926 g4555 i0 96.667 50.032967032967 90 2 49 1 1 89 2290 2379 Nannochloropsis granulata strain AGSB0037 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9106 148 1 Eukaryota Sar     Eustigmatophyceae Eustigmatales Monodopsidaceae Nannochloropsis Nannochloropsis granulata
13873408 13873408 PRJNA547066_P_NODE_3851_length_211_cov_3.659091_g3757_i0 PRJNA547066 3851 211 3.659091 7.72068201 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 385 1.61e-102   NTclustered gi|300078456|gb|GU187050.1| 858370 g3757 i0 99.526 99.4075829383886 211 1 100 0 1 211 1387 1597 Vorticella sp. SP-2009-3 18S ribosomal RNA gene, partial sequence blastn 20975 385 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. SP-2009-3
13873410 13873410 PRJNA547066_P_NODE_4091_length_201_cov_3.373494_g3997_i0 PRJNA547066 4091 201 3.373494 6.78072294 Poteriospumella 1117026 SAR_Eukaryotes SAR_Eukaryotes 372 1.18e-98   NTclustered gi|685431582|gb|KF697341.1| 1117027 g3997 i0 100 72.7412935323383 201 0 100 0 1 201 270 70 Poteriospumella lacustris strain JBC07 28S ribosomal RNA gene, partial sequence blastn 14621 372 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
17697441 17697441 PRJNA547066_P_NODE_5794_length_156_cov_1.256198_g5700_i0 PRJNA547066 5794 156 1.256198 1.95966888 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 239 9.19e-59   NTclustered gi|1837628855|gb|MN158348.1| 5909 g5700 i0 94.268 90.1923076923077 157 8 100 1 1 156 2966 2810 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14070 239 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
22188388 22188388 PRJNA547066_P_NODE_1578_length_390_cov_5.033803_g1485_i0 PRJNA547066 1578 390 5.033803 19.6318317 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 665 0   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g1485 i0 97.922 96.7666666666667 385 7 98 1 7 390 1 385 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 37739 665 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;