contig_metadata
8 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3670659 | 3670659 | PRJNA546018_S_NODE_8283_length_612_cov_2.010889_g7972_i0 | PRJNA546018 | 8283 | 612 | 2.010889 | 12.30664068 | Verrucomicrobiota | 74201 | Bacteria | Bacteria | 946 | 0 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g7972 | i0 | 96.075 | 103.392156862745 | 586 | 14 | 95 | 6 | 6 | 585 | 5153531 | 5152949 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 63276 | 952 | 0.993697478991597 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 6888568 | 6888568 | PRJNA546018_S_NODE_2926_length_1092_cov_12.659554_g2741_i0 | PRJNA546018 | 2926 | 1092 | 12.659554 | 138.24232968 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 1164 | 0 | NTclustered | gi|2874254040|emb|OY970364.1| | 412056 | g2741 | i0 | 86.397 | 168.71978021978 | 1088 | 121 | 98 | 26 | 20 | 1092 | 2168185 | 2169260 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 | blastn | 184242 | 1164 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 9439703 | 9439703 | PRJNA546018_S_NODE_55788_length_204_cov_2.853147_g55463_i0 | PRJNA546018 | 55788 | 204 | 2.853147 | 5.82041988 | Actomonas aquatica | 2866162 | Bacteria | Bacteria | 152 | 1.71e-32 | NTclustered | gi|2647674565|gb|CP139781.1| | 2866162 | g55463 | i0 | 81.967 | 21.7696078431373 | 183 | 30 | 89 | 3 | 23 | 203 | 3833904 | 3834085 | Actomonas aquatica strain WL0086 chromosome, complete genome | blastn | 4441 | 152 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Actomonas | Actomonas aquatica | |
| 10715051 | 10715051 | PRJNA546018_S_NODE_30469_length_284_cov_3.044843_g30144_i0 | PRJNA546018 | 30469 | 284 | 3.044843 | 8.64735412 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 374 | 4.93e-99 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g30144 | i0 | 92.366 | 47.6971830985916 | 262 | 20 | 92 | 0 | 2 | 263 | 513332 | 513071 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 13546 | 374 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 11989431 | 11989431 | PRJNA546018_S_NODE_12710_length_474_cov_4.426150_g12386_i0 | PRJNA546018 | 12710 | 474 | 4.42615 | 20.979951 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 302 | 4.15e-77 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g12386 | i0 | 79.186 | 1.11814345991561 | 442 | 86 | 93 | 5 | 22 | 460 | 1270089 | 1270527 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 530 | 302 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 | |
| 15813751 | 15813751 | PRJNA546018_S_NODE_33193_length_270_cov_3.095694_g32868_i0 | PRJNA546018 | 33193 | 270 | 3.095694 | 8.3583738 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 333 | 7.8899999999999995e-87 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g32868 | i0 | 91.358 | 2.6037037037037 | 243 | 21 | 90 | 0 | 7 | 249 | 3492672 | 3492430 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 703 | 333 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 | |
| 19637243 | 19637243 | PRJNA546018_S_NODE_39796_length_244_cov_1.546448_g39471_i0 | PRJNA546018 | 39796 | 244 | 1.546448 | 3.77333312 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 407 | 4.08e-109 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g39471 | i0 | 97.872 | 175.561475409836 | 235 | 5 | 96 | 0 | 10 | 244 | 501 | 735 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 42837 | 407 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 22187676 | 22187676 | PRJNA546018_S_NODE_26538_length_308_cov_2.906883_g26213_i0 | PRJNA546018 | 26538 | 308 | 2.906883 | 8.95319964 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 326 | 1.53e-84 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g26213 | i0 | 87.197 | 19.0097402597403 | 289 | 33 | 93 | 4 | 22 | 308 | 2630169 | 2630455 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 5855 | 326 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;