RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA546018 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5614966 5614966 PRJNA546018_S_NODE_44845_length_228_cov_3.263473_g44520_i0 PRJNA546018 44845 228 3.263473 7.44071844 Brachionus koreanus 1199090 Rotifera other_Eukaryota 104 5.53e-18   NTclustered gi|477541861|gb|KC603850.1| 1199090 g44520 i0 76.303 32.9342105263158 211 40 90 10 23 228 6821 7026 Brachionus sp. 'koreanus' chromosome II mitochondrion, complete sequence blastn 7509 104 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
8163559 8163559 PRJNA546018_S_NODE_20047_length_361_cov_157.393333_g19722_i0 PRJNA546018 20047 361 157.393333 568.18993213 Brachionus urceolaris 204736 Rotifera other_Eukaryota 527 4.659999999999999e-145   NTclustered gi|72153738|gb|DQ089740.1| 204736 g19722 i0 93.75 62.3573407202216 352 20 97 2 1 351 1751 2101 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 22511 527 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
9439292 9439292 PRJNA546018_S_NODE_31488_length_279_cov_1.931193_g31163_i0 PRJNA546018 31488 279 1.931193 5.38802847 Philodina citrina 468664 Rotifera other_Eukaryota 390 4.7899999999999996e-104   NTclustered gi|407227484|emb|FR856884.1| 468664 g31163 i0 93.511 4.7168458781362 262 17 94 0 3 264 2376 2115 Philodina citrina complete mitochondrial genome blastn 1316 390 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
9439680 9439680 PRJNA546018_S_NODE_54488_length_206_cov_2.282759_g54163_i0 PRJNA546018 54488 206 2.282759 4.70248354 Adineta vaga 104782 Rotifera other_Eukaryota 359 9.47e-95   NTclustered gi|72153731|gb|DQ089739.1| 104782 g54163 i0 98.058 33.3349514563107 206 4 100 0 1 206 2435 2640 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 6867 359 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
14540188 14540188 PRJNA546018_S_NODE_59612_length_194_cov_2.413534_g59287_i0 PRJNA546018 59612 194 2.413534 4.68225596 Cephalodella gibba 231616 Rotifera other_Eukaryota 274 3.28e-69   NTclustered gi|37788188|gb|AY218141.1| 231616 g59287 i0 93.122 98.701030927835 189 9 95 3 1 185 191 3 Cephalodella gibba 28S ribosomal RNA gene, partial sequence blastn 19148 274 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Cephalodella Cephalodella gibba
17697108 17697108 PRJNA546018_S_NODE_24074_length_325_cov_82.537879_g23749_i0 PRJNA546018 24074 325 82.537879 268.24810675 Ploima 84394 Rotifera other_Eukaryota 457 5.5399999999999986e-124   NTclustered gi|61200802|gb|AY829083.1| 96446 g23749 i0 94.04 90.7876923076923 302 17 93 1 1 302 1722 1422 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 29506 460 0.993478260869565 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
20912702 20912702 PRJNA546018_S_NODE_13757_length_451_cov_7.492308_g13433_i0 PRJNA546018 13757 451 7.492308 33.79030908 Proales similis 360698 Rotifera other_Eukaryota 287 1.1e-72   NTclustered gi|1859640894|gb|MN970216.1| 360698 g13433 i0 80.688 2.09977827050998 378 66 83 6 9 382 12533 12159 Proales similis mitochondrion, complete genome blastn 947 287 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;