RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA546018 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9438974 9438974 PRJNA546018_S_NODE_14328_length_440_cov_10.311346_g14003_i0 PRJNA546018 14328 440 10.311346 45.3699224 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 579 1.5799999999999993e-160   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g14003 i0 90.38 44.2363636363636 447 34 100 9 1 440 604 1048 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 19464 579 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
15814248 15814248 PRJNA546018_S_NODE_7653_length_641_cov_8.181034_g7349_i0 PRJNA546018 7653 641 8.181034 52.44042794 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 254 1.63e-62   NTclustered gi|470424971|ref|XM_004337710.1| 1257118 g7349 i0 79.275 53.4477379095164 386 63 58 12 20 392 2644 2263 Acanthamoeba castellanii str. Neff coatmer subunit, putative (ACA1_379260), partial mRNA blastn 34260 254 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24736794 24736794 PRJNA546018_S_NODE_23620_length_329_cov_2.414179_g23295_i0 PRJNA546018 23620 329 2.414179 7.94264891 Cochliopodium minus 313997 Discosea other_Eukaryota 501 2.56e-137   NTclustered gi|330902862|gb|JF298257.1| 313997 g23295 i0 94.242 59.3768996960486 330 14 99 4 1 327 619 292 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 19535 501 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;