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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA546018 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1786847 1786847 PRJNA546018_S_NODE_5942_length_744_cov_17.821376_g5674_i0 PRJNA546018 5942 744 17.821376 132.59103744 Lacustromyces hiemalis 110070 Fungi Fungi 307 1.44e-78   NTclustered gi|1866582727|gb|MT730902.1| 110070 g5674 i0 77.68 31.135752688172 569 83 75 34 1 555 4264 4802 Lacustromyces hiemalis isolate JEL0938 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23165 307 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Lacustromyces Lacustromyces hiemalis
10047718 10047718 PRJNA546018_S_NODE_45508_length_226_cov_3.363636_g45183_i0 PRJNA546018 45508 226 3.363636 7.60181736 Neocallimastigaceae 29007 Fungi Fungi 185 1.9e-42   NTclustered gi|1811122633|gb|MT085688.1| 45796 g45183 i0 83.333 87.6858407079646 210 25 92 7 1 209 587 787 Piromyces sp. isolate A1_Clone_A5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19817 185 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.
14540087 14540087 PRJNA546018_S_NODE_5292_length_794_cov_6.238745_g5037_i0 PRJNA546018 5292 794 6.238745 49.5356353 Polychytrium aggregatum 110093 Fungi Fungi 388 5.35e-103   NTclustered gi|2432171462|ref|XM_053112561.1| 110093 g5037 i0 80.074 58.6712846347607 537 95 67 10 16 546 1614 2144 Polychytrium aggregatum heat shock protein 90 kDa (BJ171DRAFT_524257), mRNA blastn 46585 388 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19637597 19637597 PRJNA546018_S_NODE_61556_length_166_cov_5.247619_g61231_i0 PRJNA546018 61556 166 5.247619 8.71104754 Rodmanochytrium sp. 2750701 Fungi Fungi 165 1.7100000000000002e-36   NTclustered gi|1866582804|gb|MT730979.1| 2750701 g61231 i0 84.94 100.343373493976 166 22 100 3 1 166 4012 3850 Rodmanochytrium sp. isolate UM1564 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16657 165 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rodmanochytrium Rodmanochytrium sp.
22187445 22187445 PRJNA546018_S_NODE_12598_length_476_cov_15.450602_g12274_i0 PRJNA546018 12598 476 15.450602 73.54486552 Rhizophydium sp. 2012224 Fungi Fungi 342 2.4499999999999993e-89   NTclustered gi|1866582435|gb|MT730610.1| 2012224 g12274 i0 80.952 106.033613445378 483 49 100 25 1 476 3970 4416 Rhizophydium sp. isolate ARG035 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 50472 342 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;