RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA546018 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10715304 10715304 PRJNA546018_S_NODE_46289_length_224_cov_2.361963_g45964_i0 PRJNA546018 46289 224 2.361963 5.29079712 Rhabdochlamydiaceae symbiont of Dictyostelium giganteum 3342349 Bacteria Bacteria 115 2.5e-21   NTclustered gi|2851290179|emb|OZ197277.1| 3342349 g45964 i0 90.698 36.5357142857143 86 8 38 0 48 133 426547 426462 Rhabdochlamydiaceae symbiont of Dictyostelium giganteum strain Digiganteum-PALH genome assembly, chromosome: 1 blastn 8184 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae symbiont of Dictyostelium giganteum
13264916 13264916 PRJNA546018_S_NODE_39071_length_246_cov_6.264865_g38746_i0 PRJNA546018 39071 246 6.264865 15.4115679 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 237 5.72e-58   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g38746 i0 85.965 78.4105691056911 228 25 91 7 23 246 1334325 1334101 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 19289 237 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
15813976 15813976 PRJNA546018_S_NODE_47373_length_221_cov_1.825000_g47048_i0 PRJNA546018 47373 221 1.825 4.03325 Neochlamydia hartmannellae 112235 Bacteria Bacteria 409 1.0100000000000001e-109   NTclustered gi|194594624|gb|EU662269.1| 112235 g47048 i0 100 74.4932126696833 221 0 100 0 1 221 646 866 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 16463 409 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
17088881 17088881 PRJNA546018_S_NODE_60294_length_190_cov_4.689922_g59969_i0 PRJNA546018 60294 190 4.689922 8.9108518 Neochlamydia hartmannellae 112235 Bacteria Bacteria 292 8.83e-75   NTclustered gi|194594624|gb|EU662269.1| 112235 g59969 i0 100 14.0736842105263 158 0 83 0 30 187 381 538 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 2674 292 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;