RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA546018 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3062240 3062240 PRJNA546018_S_NODE_56503_length_203_cov_2.281690_g56178_i0 PRJNA546018 56503 203 2.28169 4.6318307 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 167 6.0599999999999995e-37   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g56178 i0 83.511 359.20197044335 188 21 88 5 25 203 634600 634414 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 72918 167 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
10714975 10714975 PRJNA546018_S_NODE_25509_length_315_cov_2.086614_g25184_i0 PRJNA546018 25509 315 2.086614 6.5728341 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 505 1.8799999999999995e-138   NTclustered gi|2874254027|emb|OY970352.1| 171953 g25184 i0 95.556 144.653968253968 315 14 100 0 1 315 2365681 2365995 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 45566 505 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13264639 13264639 PRJNA546018_S_NODE_24691_length_321_cov_2.134615_g24366_i0 PRJNA546018 24691 321 2.134615 6.85211415 Acidobacteriota bacterium 1978231 Bacteria Bacteria 470 7.02e-128   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g24366 i0 95.033 135.034267912773 302 10 93 5 2 299 3299477 3299177 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 43346 470 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
13265007 13265007 PRJNA546018_S_NODE_44151_length_230_cov_4.917160_g43826_i0 PRJNA546018 44151 230 4.91716 11.309468 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 239 1.47e-58   NTclustered gi|217038907|gb|EU810998.1| 171953 g43826 i0 100 102.504347826087 129 0 56 0 1 129 129 1 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 23576 239 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
14539404 14539404 PRJNA546018_S_NODE_10972_length_518_cov_14.645514_g10649_i0 PRJNA546018 10972 518 14.645514 75.86376252 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 597 5.1999999999999986e-166   NTclustered gi|76574288|gb|DQ139436.1| 171953 g10649 i0 88.462 252.552123552124 494 57 95 0 1 494 494 1 Uncultured Acidobacteria bacterium clone CAL6 23S ribosomal RNA gene, partial sequence blastn 130822 597 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
20913116 20913116 PRJNA546018_S_NODE_4017_length_922_cov_8.210221_g3803_i0 PRJNA546018 4017 922 8.210221 75.69823762 Terriglobus roseus 392734 Bacteria Bacteria 1531 0   NTclustered gi|390410848|gb|CP003379.1| 926566 g3803 i0 97.961 99.3937093275488 883 18 96 0 17 899 2078313 2077431 Terriglobus roseus DSM 18391, complete genome blastn 91641 1531 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;