RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 10 ✖

bioproject 1

  • PRJNA546018 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
511018 511018 PRJNA546018_S_NODE_37901_length_251_cov_1.694737_g37576_i0 PRJNA546018 37901 251 1.694737 4.25378987 Anas platyrhynchos papillomavirus 2 2855326 Viruses Viruses 63.9 1.05e-5   NTclustered gi|2063549401|gb|MW888448.1| 2855326 g37576 i0 97.368 0.422310756972112 38 0 15 1 208 244 1688 1725 Anas platyrhynchos papillomavirus 2, complete genome blastn 106 63.9 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Anas platyrhynchos papillomavirus 2
3061822 3061822 PRJNA546018_S_NODE_31303_length_280_cov_1.598174_g30978_i0 PRJNA546018 31303 280 1.598174 4.4748872 Taupapillomavirus 3 1961786 Viruses Viruses 512 9.85e-141   NTclustered gi|2282111583|gb|ON226485.1| 1336600 g30978 i0 99.643 6.92142857142857 280 1 100 0 1 280 6155 6434 Felis catus papillomavirus 3 strain China/SMU-D21/2019, complete genome blastn 1938 512 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Taupapillomavirus Taupapillomavirus 3
17697180 17697180 PRJNA546018_S_NODE_37474_length_253_cov_1.140625_g37149_i0 PRJNA546018 37474 253 1.140625 2.88578125 Papillomaviridae 151340 Viruses Viruses 468 1.92e-127   NTclustered gi|69205080|gb|DQ085788.1| 181667 g37149 i0 100 10 253 0 100 0 1 253 375 123 Feline papillomavirus isolate FeSCC5 early protein 1 (E1) gene, partial cds blastn 2530 468 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Lambdapapillomavirus Lambdapapillomavirus 1
18362554 18362554 PRJNA546018_S_NODE_34975_length_262_cov_4.597015_g34650_i0 PRJNA546018 34975 262 4.597015 12.0441793 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.024   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g34650 i0 100 0.106870229007634 28 0 11 0 1 28 1 28 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
18362595 18362595 PRJNA546018_S_NODE_37095_length_254_cov_2.020725_g36770_i0 PRJNA546018 37095 254 2.020725 5.1326415 Genomoviridae sp. ctD6S1 2828011 Viruses Viruses 353 5.65e-93   NTclustered gi|2052881324|tpg|BK032821.1| 2828011 g36770 i0 100 2.90157480314961 191 0 88 0 48 238 34 224 MAG TPA_asm: Genomoviridae sp. ctD6S1, partial genome blastn 737 353 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Genomoviridae   Genomoviridae sp. ctD6S1
18970827 18970827 PRJNA546018_S_NODE_52715_length_209_cov_1.317568_g52390_i0 PRJNA546018 52715 209 1.317568 2.75371712 Epsilonpolyomavirus 2842669 Viruses Viruses 387 4.42e-103   NTclustered gi|2277478276|gb|MZ520135.1| 1561702 g52390 i0 100 14.0143540669856 209 0 100 0 1 209 598 806 Bovine polyomavirus 1 isolate FBS2/USA, complete genome blastn 2929 387 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Epsilonpolyomavirus Epsilonpolyomavirus bovis
19637635 19637635 PRJNA546018_S_NODE_76_length_4942_cov_7.581251_g28_i0 PRJNA546018 76 4942 7.581251 374.66542442 Erythroparvovirus ungulate1 3052194 Viruses Viruses 8983 0   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g28 i0 99.474 9.05281262646702 4942 26 100 0 1 4942 168 5109 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 44739 8983 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
20912797 20912797 PRJNA546018_S_NODE_19597_length_366_cov_3.400000_g19272_i0 PRJNA546018 19597 366 3.4 12.444 Parvovirus macaca3116 3117124 Viruses Viruses 54.7 0.01   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g19272 i0 100 0.0792349726775956 29 0 8 0 338 366 29 1 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 29 54.7 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
20913501 20913501 PRJNA546018_S_NODE_8757_length_592_cov_20.290019_g8443_i0 PRJNA546018 8757 592 20.290019 120.11691248 Erythroparvovirus ungulate1 3052194 Viruses Viruses 488 3.769999999999999e-133   NTclustered gi|1333742271|gb|MG026728.1| 172297 g8443 i0 98.551 7.69763513513514 276 4 93 0 1 276 5058 5333 Bovine parvovirus 3 isolate ujs497 nonstructural protein and structural protein genes, complete cds blastn 4557 488 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
24071181 24071181 PRJNA546018_S_NODE_36199_length_258_cov_0.989848_g35874_i0 PRJNA546018 36199 258 0.989848 2.55380784 Gammapapillomavirus 325455 Viruses Viruses 466 7.08e-127   NTclustered gi|1559669533|gb|MH777373.2| 10566 g35874 i0 99.225 3.4922480620155 258 2 100 0 1 258 6493 6236 MAG: Human papillomavirus isolate HPV-mSK_234, complete genome blastn 901 470 0.991489361702128 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;