RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA546018 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14539680 14539680 PRJNA546018_S_NODE_28332_length_296_cov_6.331915_g28007_i0 PRJNA546018 28332 296 6.331915 18.7424684 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.027   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g28007 i0 100 0.0945945945945946 28 0 9 0 1 28 8 35 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
17088327 17088327 PRJNA546018_S_NODE_25214_length_317_cov_2.847656_g24889_i0 PRJNA546018 25214 317 2.847656 9.02706952 Dinema validum 2704078 Euglenozoa other_Eukaryota 54.7 0.008   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g24889 i0 100 0.17981072555205 29 0 9 0 1 29 4 32 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 57 54.7 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
18362533 18362533 PRJNA546018_S_NODE_33575_length_268_cov_7.009662_g33250_i0 PRJNA546018 33575 268 7.009662 18.78589416 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 374 4.6099999999999995e-99   NTclustered gi|290984146|ref|XM_002674743.1| 5762 g33250 i0 93.927 0.921641791044776 247 15 92 0 1 247 1701 1455 Naegleria gruberi aspartyl-tRNA synthetase (NAEGRDRAFT_82693), mRNA blastn 247 374 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23462845 23462845 PRJNA546018_S_NODE_10499_length_531_cov_14.570213_g10176_i0 PRJNA546018 10499 531 14.570213 77.36783103 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 915 0   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g10176 i0 99.602 29.8681732580038 502 1 95 1 8 509 4655 4155 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 15860 915 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;