RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA546018 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9439654 9439654 PRJNA546018_S_NODE_52928_length_209_cov_0.878378_g52603_i0 PRJNA546018 52928 209 0.878378 1.83581002 Candidatus Nanosynbacter sp. HMT-352 2899133 Bacteria Bacteria 213 7.940000000000002e-51   NTclustered gi|2218410560|gb|CP089288.1| 2899133 g52603 i0 96.154 4.36363636363636 130 5 62 0 80 209 152905 153034 Candidatus Nanosynbacter sp. HMT-352 strain TM7-037 chromosome blastn 912 213 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-352
14539910 14539910 PRJNA546018_S_NODE_41812_length_238_cov_1.101695_g41487_i0 PRJNA546018 41812 238 1.101695 2.6220341 Candidatus Aminicenantes bacterium 2052149 Bacteria Bacteria 52.8 0.021   NTclustered gi|2107803655|gb|CP070825.1| 2052149 g41487 i0 100 0.117647058823529 28 0 12 0 172 199 281509 281482 MAG: Candidatus Aminicenantes bacterium isolate bin112 chromosome blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;