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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA546018" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA546018 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1119263 1119263 PRJNA546018_S_NODE_7821_length_633_cov_12.405594_g7515_i0 PRJNA546018 7821 633 12.405594 78.52741002 Vermamoeba 1260114 Tubulinea other_Eukaryota 1066 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g7515 i0 98.2 62.4170616113744 611 9 96 2 24 633 5177 5786 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 39510 1072 0.994402985074627 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1786777 1786777 PRJNA546018_S_NODE_55102_length_205_cov_2.840278_g54777_i0 PRJNA546018 55102 205 2.840278 5.8225699 Angulamoeba microcystivorans 1654978 Evosea other_Eukaryota 239 1.28e-58   NTclustered gi|961557578|gb|KP719182.2| 1654978 g54777 i0 90.27 15.6780487804878 185 15 89 3 1 183 1089 906 Angulamoeba microcystivorans strain A4WVB clone 2 small subunit ribosomal RNA gene, partial sequence blastn 3214 239 1 Eukaryota Amoebozoa   Evosea Variosea     Angulamoeba Angulamoeba microcystivorans
4338413 4338413 PRJNA546018_S_NODE_7604_length_643_cov_5.896907_g7301_i0 PRJNA546018 7604 643 5.896907 37.91711201 Squamamoeba japonica 1167875 Evosea other_Eukaryota 265 7.539999999999999e-66   NTclustered gi|381423467|gb|JN638032.1| 1167875 g7301 i0 83.746 36.4043545878694 283 42 44 4 140 419 1179 1460 Squamamoeba japonica strain CCAP 1593/1 clone 2224 18S ribosomal RNA gene, partial sequence blastn 23408 265 1 Eukaryota Amoebozoa   Evosea       Squamamoeba Squamamoeba japonica
9438974 9438974 PRJNA546018_S_NODE_14328_length_440_cov_10.311346_g14003_i0 PRJNA546018 14328 440 10.311346 45.3699224 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 579 1.5799999999999993e-160   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g14003 i0 90.38 44.2363636363636 447 34 100 9 1 440 604 1048 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 19464 579 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
13264966 13264966 PRJNA546018_S_NODE_41571_length_238_cov_4.225989_g41246_i0 PRJNA546018 41571 238 4.225989 10.05785382 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 429 8.45e-116   NTclustered gi|300078496|gb|GU001158.1| 5778 g41246 i0 99.16 33.4033613445378 238 2 100 0 1 238 3677 3440 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7950 429 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15814248 15814248 PRJNA546018_S_NODE_7653_length_641_cov_8.181034_g7349_i0 PRJNA546018 7653 641 8.181034 52.44042794 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 254 1.63e-62   NTclustered gi|470424971|ref|XM_004337710.1| 1257118 g7349 i0 79.275 53.4477379095164 386 63 58 12 20 392 2644 2263 Acanthamoeba castellanii str. Neff coatmer subunit, putative (ACA1_379260), partial mRNA blastn 34260 254 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19637461 19637461 PRJNA546018_S_NODE_51976_length_210_cov_1.617450_g51651_i0 PRJNA546018 51976 210 1.61745 3.396645 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 335 1.6299999999999994e-87   NTclustered gi|221185864|gb|FJ577811.1| 590481 g51651 i0 98.438 0.914285714285714 192 0 90 1 2 190 743 552 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 192 335 1 Eukaryota Amoebozoa             uncultured Amoebozoa
19637651 19637651 PRJNA546018_S_NODE_8516_length_602_cov_8.238447_g8204_i0 PRJNA546018 8516 602 8.238447 49.59545094 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 207 1.1999999999999998e-48   NTclustered gi|292559443|ref|NC_013986.1| 5778 g8204 i0 83.945 68.6395348837209 218 34 36 1 69 285 28057 27840 Hartmannella vermiformis mitochondrion, complete genome blastn 41321 207 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23463409 23463409 PRJNA546018_S_NODE_44379_length_230_cov_1.153846_g44054_i0 PRJNA546018 44379 230 1.153846 2.6538458 Dictyostelium purpureum 5786 Evosea other_Eukaryota 211 3.2e-50   NTclustered gi|85062628|gb|DQ340386.1| 5786 g44054 i0 88.571 48.1608695652174 175 18 76 2 1 174 8297 8124 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 11077 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
24736794 24736794 PRJNA546018_S_NODE_23620_length_329_cov_2.414179_g23295_i0 PRJNA546018 23620 329 2.414179 7.94264891 Cochliopodium minus 313997 Discosea other_Eukaryota 501 2.56e-137   NTclustered gi|330902862|gb|JF298257.1| 313997 g23295 i0 94.242 59.3768996960486 330 14 99 4 1 327 619 292 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 19535 501 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;