RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA543299" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA543299 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4336642 4336642 PRJNA543299_P_NODE_24444_length_163_cov_0.894737_g24287_i0 PRJNA543299 24444 163 0.894737 1.45842131 Neobodo sp. 2815825 Euglenozoa other_Eukaryota 178 2.1499999999999993e-40   NTclustered gi|1996609214|gb|MW694333.1| 2815825 g24287 i0 86.667 57.2453987730061 165 17 100 5 1 163 1278 1117 Neobodo sp. isolate G08 small subunit ribosomal RNA gene, partial sequence blastn 9331 178 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo sp.
8162217 8162217 PRJNA543299_P_NODE_10607_length_229_cov_1.600000_g10450_i0 PRJNA543299 10607 229 1.6 3.664 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 401 1.7599999999999995e-107   NTclustered gi|27461806|gb|AY130826.1| 56466 g10450 i0 98.253 1.13100436681223 229 4 100 0 1 229 123 351 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 259 401 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
15812394 15812394 PRJNA543299_P_NODE_21533_length_166_cov_0.871795_g21376_i0 PRJNA543299 21533 166 0.871795 1.4471797 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 106 1.05e-18   NTclustered gi|5733380|gb|AF095839.1|AF095839 101493 g21376 i0 91.139 0.475903614457831 79 6 48 1 85 163 1850 1927 Entosiphon sulcatum trans-spliced leader SL, 5S ribosomal RNA, U5 snRNA, U1 snRNA, and U2 snRNA genes, complete sequence blastn 79 106 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
22186581 22186581 PRJNA543299_P_NODE_9258_length_244_cov_2.866667_g9101_i0 PRJNA543299 9258 244 2.866667 6.99466748 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|1031970221|gb|CP015655.1| 85057 g9101 i0 100 0.114754098360656 28 0 11 0 139 166 50510 50537 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;