RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA543299" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA543299 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15146699 15146699 PRJNA543299_P_NODE_13872_length_201_cov_1.335526_g13715_i0 PRJNA543299 13872 201 1.335526 2.68440726 Herpetosiphon 64 Bacteria Bacteria 370 4.25e-98   NTclustered gi|444303814|ref|NR_074236.1| 65 g13715 i0 100 103.457711442786 200 0 99 0 1 200 330 529 Herpetosiphon aurantiacus 16S ribosomal RNA, partial sequence blastn 20795 370 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
24070610 24070610 PRJNA543299_P_NODE_19399_length_170_cov_2.099174_g19242_i0 PRJNA543299 19399 170 2.099174 3.5685958 Herpetosiphon 64 Bacteria Bacteria 315 1.64e-81   NTclustered gi|470482680|ref|NR_076546.1| 65 g19242 i0 100 171.811764705882 170 0 100 0 1 170 2478 2309 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 29208 315 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;