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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA541476 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
509293 509293 PRJNA541476_P_NODE_4261_length_555_cov_51.686722_g4065_i0 PRJNA541476 4261 555 51.686722 286.8613071 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 3.0200000000000002e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g4065 i0 79.05 14.2792792792793 358 71 64 4 105 460 127 482 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
1783758 1783758 PRJNA541476_P_NODE_10022_length_360_cov_4.411150_g9816_i0 PRJNA541476 10022 360 4.41115 15.88014 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 233 1.14e-56   NTclustered gi|166041070|emb|CU355542.1| 100861 g9816 i0 79.518 41.9888888888889 332 64 92 4 19 348 120 449 Aphanomyces euteiches cDNA blastn 15116 233 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
1783815 1783815 PRJNA541476_P_NODE_12602_length_329_cov_10.253906_g12396_i0 PRJNA541476 12602 329 10.253906 33.73535074 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 279 1.3e-70   NTclustered gi|2289|emb|X59936.1| 4766 g12396 i0 87.552 71.0091185410334 241 30 73 0 89 329 1 241 A.bisexualis gene for actin blastn 23362 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
1784725 1784725 PRJNA541476_P_NODE_8962_length_379_cov_1.493464_g8756_i0 PRJNA541476 8962 379 1.493464 5.66022856 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 265 4.26e-66   NTclustered gi|695428657|ref|XM_009531708.1| 67593 g8756 i0 81.269 17.4353562005277 331 58 87 4 14 342 130 458 Phytophthora sojae hypothetical protein partial mRNA blastn 6608 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
4336247 4336247 PRJNA541476_P_NODE_8264_length_393_cov_2.365625_g8060_i0 PRJNA541476 8264 393 2.365625 9.29690625 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 228 5.8199999999999984e-55   NTclustered gi|813198519|ref|XM_012353453.1| 695850 g8060 i0 78.393 12.9236641221374 361 70 91 8 8 364 477 121 Saprolegnia parasitica CBS 223.65 succinate dehydrogenase iron-sulfur subunit mRNA blastn 5079 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10047015 10047015 PRJNA541476_P_NODE_8488_length_389_cov_0.955696_g8284_i0 PRJNA541476 8488 389 0.955696 3.71765744 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 110 2.17e-19   NTclustered gi|2314988938|ref|NC_067073.1| 89334 g8284 i0 86.275 25.6118251928021 102 12 26 2 34 134 6670 6570 Phytophthora clandestina voucher P3942 mitochondrion, complete genome blastn 9963 111 0.990990990990991 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
10712728 10712728 PRJNA541476_P_NODE_22609_length_271_cov_2.343434_g22403_i0 PRJNA541476 22609 271 2.343434 6.35070614 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 163 1.1e-35   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g22403 i0 77.778 25.8523985239852 270 56 99 4 1 268 616 883 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 7006 163 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11321629 11321629 PRJNA541476_P_NODE_8629_length_386_cov_0.945687_g8425_i0 PRJNA541476 8629 386 0.94568700000000006 3.65035182 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 252 3.39e-62   NTclustered gi|50261276|ref|NC_005984.1| 4770 g8425 i0 78.663 76.2538860103627 389 75 99 7 2 386 27036 27420 Saprolegnia ferax mitochondrion, complete genome blastn 29434 252 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
14537247 14537247 PRJNA541476_P_NODE_1512_length_966_cov_2.344905_g1364_i0 PRJNA541476 1512 966 2.344905 22.6517823 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 664 0   NTclustered gi|752272326|gb|KJ639192.1| 115421 g1364 i0 79.485 95.4844720496894 970 171 99 22 1 956 1112 2067 Pythium ultimum var. sporangiiferum strain DAOM 240290 cytochrome c oxidase subunit 2 (COII) and cytochrome c oxidase subunit 1 (COI) genes, partial cds; mitochondrial blastn 92238 664 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
15146623 15146623 PRJNA541476_P_NODE_40152_length_242_cov_0.917160_g39946_i0 PRJNA541476 40152 242 0.91716 2.2195272 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 231 2.6099999999999996e-56   NTclustered gi|2314988899|ref|NC_067072.1| 89335 g39946 i0 84.298 95.3347107438017 242 32 99 6 2 240 2851 3089 Phytophthora ilicis voucher P3939 mitochondrion, complete genome blastn 23071 231 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ilicis
17086259 17086259 PRJNA541476_P_NODE_27414_length_255_cov_1.445055_g27208_i0 PRJNA541476 27414 255 1.445055 3.68489025 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 135 2.24e-27   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g27208 i0 89.189 23.6 111 9 43 3 72 181 41764 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 6018 135 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
18360078 18360078 PRJNA541476_P_NODE_19255_length_285_cov_2.764151_g19049_i0 PRJNA541476 19255 285 2.764151 7.87783035 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 191 5.35e-44   NTclustered gi|669165625|ref|XM_008620153.1| 1156394 g19049 i0 80.632 4.54736842105263 253 43 88 5 25 274 1093 1342 Saprolegnia diclina VS20 succinyl-CoA synthetase beta subunit mRNA blastn 1296 191 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
19635219 19635219 PRJNA541476_P_NODE_3836_length_589_cov_44.098837_g3642_i0 PRJNA541476 3836 589 44.098837 259.74214993 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.82e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g3642 i0 80.533 57.4329371816638 375 65 62 4 30 397 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23460934 23460934 PRJNA541476_P_NODE_259_length_1928_cov_8.711051_g215_i0 PRJNA541476 259 1928 8.711051 167.94906328 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 1038 0   NTclustered gi|22086549|gb|AF402100.1| 4768 g215 i0 77.223 79.8054979253112 1844 376 95 40 24 1845 1843 22 Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds blastn 153865 1038 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
24734654 24734654 PRJNA541476_P_NODE_260_length_1928_cov_8.243666_g215_i1 PRJNA541476 260 1928 8.243666 158.93788048 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 1016 0   NTclustered gi|22086549|gb|AF402100.1| 4768 g215 i1 77.069 86.149377593361 1849 370 95 43 84 1905 22 1843 Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds blastn 166096 1016 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;