RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA541476 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
508421 508421 PRJNA541476_P_NODE_10941_length_348_cov_1.480000_g10735_i0 PRJNA541476 10941 348 1.48 5.1504 Cavenderia fasciculata 261658 Evosea other_Eukaryota 89.8 2.51e-13   NTclustered gi|187764061|ref|NC_010653.1| 261658 g10735 i0 98.039 0.310344827586207 51 1 15 0 194 244 21227 21177 Dictyostelium fasciculatum mitochondrion, complete genome blastn 108 89.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
6886928 6886928 PRJNA541476_P_NODE_7686_length_408_cov_1.808955_g7482_i0 PRJNA541476 7686 408 1.808955 7.3805364 Lamproderma scintillans 1115720 Evosea other_Eukaryota 383 1.2199999999999998e-101   NTclustered gi|2306687667|gb|MZ234283.1| 1115720 g7482 i0 83.784 92.8161764705882 407 62 99 4 1 405 290 694 Lamproderma scintillans voucher LE265994 translation elongation factor EF-1 alpha (EF1A) gene, partial cds blastn 37869 383 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma scintillans
13263063 13263063 PRJNA541476_P_NODE_4571_length_533_cov_2.589130_g4372_i0 PRJNA541476 4571 533 2.58913 13.8000629 Dictyostelium purpureum 5786 Evosea other_Eukaryota 405 3.49e-108   NTclustered gi|330791897|ref|XM_003283980.1| 5786 g4372 i0 80.718 47.2270168855535 529 95 99 5 7 533 1382 859 Dictyostelium purpureum 26S proteasome ATPase 2 subunit (DICPUDRAFT_96551), mRNA blastn 25172 405 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16421318 16421318 PRJNA541476_P_NODE_19593_length_284_cov_1.189573_g19387_i0 PRJNA541476 19593 284 1.189573 3.37838732 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|330844935|ref|XM_003294315.1| 5786 g19387 i0 87.5 11.7676056338028 48 6 17 0 204 251 2180 2133 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_96022), partial mRNA blastn 3342 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
20910775 20910775 PRJNA541476_P_NODE_27917_length_253_cov_2.177778_g27711_i0 PRJNA541476 27917 253 2.177778 5.50977834 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.006   NTclustered gi|1160555684|ref|XM_020573667.1| 670386 g27711 i0 96.875 0.58498023715415 32 1 13 0 188 219 1725 1694 Polysphondylium pallidum PN500 sumo-activating enzyme subunit 2 (uba2), partial mRNA blastn 148 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
23460768 23460768 PRJNA541476_P_NODE_19719_length_283_cov_1.476190_g19513_i0 PRJNA541476 19719 283 1.47619 4.1776177 Dictyostelium purpureum 5786 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|330805835|ref|XM_003290835.1| 5786 g19513 i0 100 0.102473498233216 29 0 10 0 255 283 607 579 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_81598), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;