RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA541476 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20910683 20910683 PRJNA541476_P_NODE_24277_length_265_cov_2.328125_g24071_i0 PRJNA541476 24277 265 2.328125 6.16953125 Anneissia japonica 1529436 Echinodermata other_Eukaryota 243 1.34e-59   NTclustered gi|1826635996|ref|XM_033257131.1| 1529436 g24071 i0 83.333 67.4452830188679 264 42 99 2 3 265 108 370 PREDICTED: Anneissia japonica tubulin beta chain (LOC117113707), transcript variant X1, mRNA blastn 17873 243 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
24070533 24070533 PRJNA541476_P_NODE_6499_length_443_cov_2.389189_g6295_i0 PRJNA541476 6499 443 2.389189 10.58410727 Metazoa 33208 Echinodermata other_Eukaryota 52.8 0.043   NTclustered gi|2037917966|ref|XM_041605365.1| 7654 g6295 i0 100 0.379232505643341 28 0 6 0 404 431 1285 1258 PREDICTED: Lytechinus variegatus proteolipid protein DM beta-like (LOC121412574), mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;