RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA541476 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3060100 3060100 PRJNA541476_P_NODE_40843_length_238_cov_2.363636_g40637_i0 PRJNA541476 40843 238 2.363636 5.62545368 Piromyces sp. E2 73868 Fungi Fungi 219 1.99e-52   NTclustered gi|7838274|emb|AJ238886.1| 73868 g40637 i0 83.761 98.8739495798319 234 34 97 4 1 232 406 637 Piromyces sp. E2 hsp70.1 gene for putative heat shock protein 70, partial blastn 23532 219 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2
13263044 13263044 PRJNA541476_P_NODE_4151_length_563_cov_4.208163_g3955_i0 PRJNA541476 4151 563 4.208163 23.69195769 Synchytrium microbalum 1806994 Fungi Fungi 440 1.01e-118   NTclustered gi|1759161090|ref|XM_031170872.1| 1806994 g3955 i0 82.961 85.7175843694494 493 78 87 6 1 490 749 1238 Synchytrium microbalum succinate dehydrogenase (SmJEL517_g04944), partial mRNA blastn 48259 440 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
19634562 19634562 PRJNA541476_P_NODE_15856_length_304_cov_1.082251_g15650_i0 PRJNA541476 15856 304 1.082251 3.29004304 Synchytrium microbalum 1806994 Fungi Fungi 143 1.63e-29   NTclustered gi|1759151272|ref|XM_031169209.1| 1806994 g15650 i0 84.247 28.0098684210526 146 23 48 0 111 256 482 337 Synchytrium microbalum uncharacterized protein (SmJEL517_g03281), partial mRNA blastn 8515 143 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;