RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA541476 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3059347 3059347 PRJNA541476_P_NODE_1523_length_961_cov_22.644144_g1375_i0 PRJNA541476 1523 961 22.644144 217.61022384 Stigeoclonium helveticum 55999 Plants Plants 65.8 1.25e-5   NTclustered gi|162134275|gb|EU123958.1| 55999 g1375 i0 97.368 0.234131113423517 38 1 4 0 2 39 1858 1821 Stigeoclonium helveticum strain UTEX 441 small-subunit ribosomal RNA (rns) gene, complete sequence; mitochondrial blastn 225 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Stigeoclonium Stigeoclonium helveticum
3059530 3059530 PRJNA541476_P_NODE_23163_length_269_cov_2.234694_g22957_i0 PRJNA541476 23163 269 2.234694 6.01132686 Chlamydomonas reinhardtii 3055 Plants Plants 62.1 4.09e-5   NTclustered gi|2082252565|ref|XM_043065027.1| 3055 g22957 i0 100 1.23048327137546 33 0 12 0 66 98 1504 1472 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_08g370700v5), mRNA blastn 331 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9437020 9437020 PRJNA541476_P_NODE_27568_length_254_cov_2.535912_g27362_i0 PRJNA541476 27568 254 2.535912 6.44121648 Monoraphidium neglectum 145388 Plants Plants 56.5 0.002   NTclustered gi|926784205|ref|XM_014045123.1| 145388 g27362 i0 94.595 0.740157480314961 37 1 15 1 149 185 2808 2773 Monoraphidium neglectum Non-histone chromosomal protein 6 partial mRNA blastn 188 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
10712987 10712987 PRJNA541476_P_NODE_31069_length_250_cov_0.875706_g30863_i0 PRJNA541476 31069 250 0.875706 2.189265 Bathycoccus prasinos 41875 Plants Plants 54.7 0.006   NTclustered gi|612391585|ref|XM_007511252.1| 41875 g30863 i0 100 1.264 29 0 12 0 1 29 470 442 Bathycoccus prasinos predicted protein (Bathy09g04020), partial mRNA blastn 316 54.7 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
18360481 18360481 PRJNA541476_P_NODE_33395_length_247_cov_5.000000_g33189_i0 PRJNA541476 33395 247 5 12.35 Mantoniella tinhauana 3097027 Plants Plants 305 1.55e-78   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g33189 i0 89.024 95.0971659919028 246 27 99 0 2 247 1503597 1503352 Mantoniella tinhauana isolate LFS chromosome 5 blastn 23489 305 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
23461463 23461463 PRJNA541476_P_NODE_41719_length_228_cov_4.961290_g41513_i0 PRJNA541476 41719 228 4.96129 11.3117412 Mantoniella tinhauana 3097027 Plants Plants 111 3.31e-20   NTclustered gi|2735153284|gb|CP140069.1| 3097027 g41513 i0 85.849 0.881578947368421 106 13 46 2 2 106 613825 613929 Mantoniella tinhauana isolate LFS chromosome 8 blastn 201 111 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;