RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA541476 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9436960 9436960 PRJNA541476_P_NODE_25208_length_262_cov_1.634921_g25002_i0 PRJNA541476 25208 262 1.634921 4.28349302 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.97e-5   NTclustered gi|82705688|ref|XM_721979.1| 5861 g25002 i0 97.222 1.51908396946565 36 1 14 0 227 262 1172 1137 Plasmodium yoelii conserved Plasmodium protein, unknown function (PY17X_0912100), partial mRNA blastn 398 62.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
10712569 10712569 PRJNA541476_P_NODE_1529_length_960_cov_3.632469_g1381_i0 PRJNA541476 1529 960 3.632469 34.8717024 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.027   NTclustered gi|916505125|ref|XM_013497709.1| 44415 g1381 i0 96.875 0.0333333333333333 32 1 3 0 316 347 820 851 Eimeria mitis uncharacterized protein (EMH_0059720), partial mRNA blastn 32 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
11987575 11987575 PRJNA541476_P_NODE_29530_length_251_cov_1.443820_g29324_i0 PRJNA541476 29530 251 1.44382 3.6239882 Plasmodium gaboni 647221 SAR_Eukaryotes SAR_Eukaryotes 209 1.28e-49   NTclustered gi|1084892469|ref|XM_018787044.1| 647221 g29324 i0 82.041 32.808764940239 245 44 98 0 4 248 505 749 Plasmodium gaboni putative 26S protease regulatory subunit 8 partial mRNA blastn 8235 209 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
14537192 14537192 PRJNA541476_P_NODE_12452_length_331_cov_1.732558_g12246_i0 PRJNA541476 12452 331 1.732558 5.73476698 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|916498997|ref|XM_013494864.1| 44415 g12246 i0 100 8.52567975830816 30 0 9 0 280 309 432 461 Eimeria mitis uncharacterized protein (EMH_0034390), partial mRNA blastn 2822 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
14537691 14537691 PRJNA541476_P_NODE_32132_length_249_cov_0.880682_g31926_i0 PRJNA541476 32132 249 0.880682 2.19289818 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|209877626|ref|XM_002140219.1| 441375 g31926 i0 100 0.112449799196787 28 0 11 0 50 77 366 393 Cryptosporidium muris RN66 uncharacterized protein (CMU_016560), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
17086140 17086140 PRJNA541476_P_NODE_23134_length_269_cov_3.943878_g22928_i0 PRJNA541476 23134 269 3.943878 10.60903182 Plasmodium brasilianum 5824 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.88e-13   NTclustered gi|2785757340|ref|XM_067215922.1| 5824 g22928 i0 83.505 1.44981412639405 97 15 36 1 15 111 1208 1303 Plasmodium brasilianum 50S ribosomal protein L1 (MKS88_000484), partial mRNA blastn 390 89.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
17696508 17696508 PRJNA541476_P_NODE_6394_length_447_cov_1.248663_g6191_i0 PRJNA541476 6394 447 1.248663 5.58152361 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|2785763772|ref|XM_067216866.1| 5824 g6191 i0 97.143 1.98434004474273 35 0 8 1 349 382 2231 2197 Plasmodium brasilianum uncharacterized protein (MKS88_003745), partial mRNA blastn 887 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;