RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA541476 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
508536 508536 PRJNA541476_P_NODE_16881_length_297_cov_10.312500_g16675_i0 PRJNA541476 16881 297 10.3125 30.628125 Deinococcus proteolyticus 55148 Bacteria Bacteria 499 8.2e-137   NTclustered gi|324314064|gb|CP002536.1| 693977 g16675 i0 96.98 207.542087542088 298 8 100 1 1 297 174031 173734 Deinococcus proteolyticus MRP, complete genome blastn 61640 499 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus proteolyticus
1783801 1783801 PRJNA541476_P_NODE_12062_length_335_cov_2.297710_g11856_i0 PRJNA541476 12062 335 2.29771 7.6973285 Deinococcus radiophilus 32062 Bacteria Bacteria 326 1.69e-84   NTclustered gi|2152123021|gb|CP086380.1| 32062 g11856 i0 85.897 62.8149253731343 312 36 92 8 25 333 940098 939792 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 21043 326 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus
2394023 2394023 PRJNA541476_P_NODE_38002_length_244_cov_0.766082_g37796_i0 PRJNA541476 38002 244 0.766082 1.86924008 Truepera 332248 Bacteria Bacteria 200 7.4299999999999985e-47   NTclustered gi|2573973991|gb|CP133611.1| 332249 g37796 i0 82.128 4.65983606557377 235 40 96 2 1 234 843291 843058 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 1137 200 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
6222124 6222124 PRJNA541476_P_NODE_11945_length_336_cov_4.589354_g11739_i0 PRJNA541476 11945 336 4.589354 15.42022944 Deinococcus 1298 Bacteria Bacteria 374 5.959999999999998e-99   NTclustered gi|2152123021|gb|CP086380.1| 32062 g11739 i0 86.804 38.3779761904762 341 37 100 8 1 336 2087031 2086694 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 12895 374 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus
7496653 7496653 PRJNA541476_P_NODE_13926_length_318_cov_1.081633_g13720_i0 PRJNA541476 13926 318 1.081633 3.43959294 Deinococcus 1298 Bacteria Bacteria 549 8.669999999999997e-152   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g13720 i0 97.799 36.1194968553459 318 7 100 0 1 318 426506 426823 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 11486 549 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
18970046 18970046 PRJNA541476_P_NODE_18635_length_288_cov_5.986047_g18429_i0 PRJNA541476 18635 288 5.986047 17.23981536 Deinococcus 1298 Bacteria Bacteria 527 3.63e-145   NTclustered gi|821341785|gb|CP011389.1| 1309411 g18429 i0 99.653 193.850694444444 288 1 100 0 1 288 1636414 1636127 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 55829 532 0.990601503759398 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
24070513 24070513 PRJNA541476_P_NODE_25119_length_262_cov_5.015873_g24913_i0 PRJNA541476 25119 262 5.015873 13.14158726 Deinococcus 1298 Bacteria Bacteria 484 1.99e-132   NTclustered gi|2113031129|gb|OK500351.1| 47478 g24913 i0 100 104 262 0 100 0 1 262 482 743 Deinococcus sp. strain R11 16S ribosomal RNA gene, partial sequence blastn 27248 484 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;