RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA541476" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA541476 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1784086 1784086 PRJNA541476_P_NODE_242_length_1979_cov_6.893494_g200_i0 PRJNA541476 242 1979 6.893494 136.42224626 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 1716 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g200 i0 82.682 187.601313794846 2021 266 99 61 1 1968 2060527 2058538 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 371263 1716 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
4335319 4335319 PRJNA541476_P_NODE_11704_length_339_cov_1.819549_g11498_i0 PRJNA541476 11704 339 1.819549 6.16827111 Bremerella sp. P1 3026424 Bacteria Bacteria 52.8 0.032   NTclustered gi|2446655020|gb|CP118164.1| 3026424 g11498 i0 96.774 0.0914454277286136 31 1 9 0 81 111 2376164 2376134 Bremerella sp. P1 chromosome, complete genome blastn 31 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Bremerella Bremerella sp. P1
17696480 17696480 PRJNA541476_P_NODE_2214_length_796_cov_1.449516_g2038_i0 PRJNA541476 2214 796 1.449516 11.53814736 Opitutaceae 134623 Bacteria Bacteria 95.3 1.31e-14   NTclustered gi|573471959|gb|CP007053.1| 794903 g2038 i0 76.087 19.0263819095477 184 42 23 2 465 647 2149300 2149118 Opitutaceae bacterium TAV5, complete genome blastn 15145 95.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;