RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3669770 3669770 PRJNA540466_S_NODE_50483_length_263_cov_1.884211_g49934_i0 PRJNA540466 50483 263 1.884211 4.95547493 Metazoa 33208 Porifera other_Eukaryota 102 2.35e-17   NTclustered gi|2432606641|gb|OQ341438.1| 1006814 g49934 i0 80.303 2.04942965779468 132 26 50 0 54 185 226 357 Thenea schmidtii voucher PN83 large subunit ribosomal RNA gene, partial sequence blastn 539 102 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Theneidae Thenea Thenea schmidti
5611670 5611670 PRJNA540466_S_NODE_20525_length_391_cov_1.962264_g19976_i0 PRJNA540466 20525 391 1.962264 7.67245224 Haliclona sp. BKON-2565 3127636 Porifera other_Eukaryota 180 1.6399999999999999e-40   NTclustered gi|2899163455|gb|PP464275.1| 3127636 g19976 i0 83.77 19.460358056266 191 29 49 2 72 261 2192 2003 Haliclona sp. BKON-2565 isolate H2565 mitochondrion, complete genome blastn 7609 180 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Chalinidae Haliclona Haliclona sp. BKON-2565
7496542 7496542 PRJNA540466_S_NODE_25266_length_355_cov_2.446809_g24717_i0 PRJNA540466 25266 355 2.446809 8.68617195 Haplosclerida 6049 Porifera other_Eukaryota 108 7.07e-19   NTclustered gi|1284883228|gb|KY825184.1| 178514 g24717 i0 81.159 6.67042253521127 138 22 39 3 196 332 3474 3340 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2368 108 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa
18359294 18359294 PRJNA540466_S_NODE_10675_length_519_cov_17.948430_g10138_i0 PRJNA540466 10675 519 17.94843 93.1523517 Sycon ciliatum 27933 Porifera other_Eukaryota 95.3 8.33e-15   NTclustered gi|2732909594|ref|XM_065321551.1| 27933 g10138 i0 88.462 0.15028901734104 78 9 15 0 436 513 919 842 PREDICTED: Sycon ciliatum uncharacterized LOC135808368 (LOC135808368), mRNA blastn 78 95.3 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;