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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA540466 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4946600 4946600 PRJNA540466_S_NODE_28504_length_336_cov_2.060837_g27955_i0 PRJNA540466 28504 336 2.060837 6.92441232 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 196 1.38e-45   NTclustered gi|2794881459|ref|XM_067892853.1| 164328 g27955 i0 83.028 52.5059523809524 218 35 65 2 82 298 237 21 Phytophthora ramorum 40S ribosomal protein S17 (KRP23_773), partial mRNA blastn 17642 196 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
5611584 5611584 PRJNA540466_S_NODE_11985_length_496_cov_1.484634_g11442_i0 PRJNA540466 11985 496 1.484634 7.36378464 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.048   NTclustered gi|669162327|ref|XM_008618504.1| 1156394 g11442 i0 100 0.0564516129032258 28 0 6 0 419 446 995 1022 Saprolegnia diclina VS20 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
5611773 5611773 PRJNA540466_S_NODE_33105_length_315_cov_0.954545_g32556_i0 PRJNA540466 33105 315 0.954545 3.00681675 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 76.8 1.75e-9   NTclustered gi|325194231|emb|FR825088.1| 890382 g32556 i0 86.301 0.355555555555556 73 7 23 3 63 133 659 730 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 112 76.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5611905 5611905 PRJNA540466_S_NODE_45785_length_274_cov_1.527363_g45236_i0 PRJNA540466 45785 274 1.527363 4.18497462 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 95.3 4.12e-15   NTclustered gi|2795027182|ref|XM_067926253.1| 4785 g45236 i0 89.333 1.97445255474453 75 8 27 0 6 80 564 490 Phytophthora cinnamomi 40S ribosomal protein S8 (IUM83_02343), partial mRNA blastn 541 95.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13872333 13872333 PRJNA540466_S_NODE_60571_length_246_cov_0.890173_g60022_i0 PRJNA540466 60571 246 0.890173 2.18982558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.69e-13   NTclustered gi|2795030501|ref|XM_067927581.1| 4785 g60022 i0 89.855 5.54878048780488 69 7 28 0 4 72 1030 1098 Phytophthora cinnamomi Ribonucleoside-diphosphate reductase small chain (IUM83_03567), partial mRNA blastn 1365 89.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13872354 13872354 PRJNA540466_S_NODE_8751_length_561_cov_6.670082_g8243_i0 PRJNA540466 8751 561 6.670082 37.41916002 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 165 6.81e-36   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g8243 i0 78.547 50.9625668449198 289 34 47 9 201 462 2083 2370 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 28590 165 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
14536929 14536929 PRJNA540466_S_NODE_47672_length_269_cov_2.831633_g47123_i0 PRJNA540466 47672 269 2.831633 7.61709277 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 167 8.429999999999998e-37   NTclustered gi|2794922182|ref|XM_067881336.1| 164328 g47123 i0 94.444 2.00743494423792 108 6 40 0 162 269 306 199 Phytophthora ramorum 60S ribosomal protein L36-1 (KRP23_10849), partial mRNA blastn 540 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
19634258 19634258 PRJNA540466_S_NODE_50996_length_262_cov_1.629630_g50447_i0 PRJNA540466 50996 262 1.62963 4.2696306 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|695459424|ref|XM_009539439.1| 67593 g50447 i0 96.97 0.125954198473282 33 0 13 1 177 209 215 246 Phytophthora sojae hypothetical protein partial mRNA blastn 33 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;