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contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 22 ✖

analysis 1

  • blastn · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
508229 508229 PRJNA540466_S_NODE_52921_length_258_cov_1.983784_g52372_i0 PRJNA540466 52921 258 1.983784 5.11816272 Caenorhabditis elegans 6239 Nematoda Nematoda 436 5.549999999999999e-118   NTclustered gi|1972252859|ref|NM_001267265.5| 6239 g52372 i0 100 4.55038759689922 236 0 91 0 1 236 424 189 Caenorhabditis elegans Large ribosomal subunit protein eL32 (rpl-32), mRNA blastn 1174 436 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
1783508 1783508 PRJNA540466_S_NODE_45442_length_275_cov_1.158416_g44893_i0 PRJNA540466 45442 275 1.158416 3.185644 Caenorhabditis elegans 6239 Nematoda Nematoda 508 1.2499999999999999e-139   NTclustered gi|1495011|emb|Z78413.1| 6239 g44893 i0 100 5.05818181818182 275 0 100 0 1 275 14342 14068 Caenorhabditis elegans Cosmid T01C3, complete sequence blastn 1391 508 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3058826 3058826 PRJNA540466_S_NODE_23743_length_365_cov_32.958904_g23194_i0 PRJNA540466 23743 365 32.958904 120.2999996 Caenorhabditis elegans 6239 Nematoda Nematoda 176 1.97e-39   NTclustered gi|351047525|emb|FO080366.1| 6239 g23194 i0 87.097 39.1479452054795 155 20 42 0 1 155 15524 15370 Caenorhabditis elegans Cosmid T26A5, complete sequence blastn 14289 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3058986 3058986 PRJNA540466_S_NODE_4103_length_713_cov_20120.471875_g3733_i0 PRJNA540466 4103 713 20120.471875 143458.96446875 Strongyloides papillosus 174720 Nematoda Nematoda 202 6.689999999999998e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g3733 i0 79.649 12.9873772791024 285 54 40 4 146 428 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 9260 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
3059108 3059108 PRJNA540466_S_NODE_57443_length_250_cov_1.322034_g56894_i0 PRJNA540466 57443 250 1.322034 3.305085 Caenorhabditis elegans 6239 Nematoda Nematoda 396 9.079999999999996e-106   NTclustered gi|1734330880|ref|NM_069429.5| 6239 g56894 i0 99.539 2.628 217 1 87 0 18 234 1908 1692 Caenorhabditis elegans Kinetochore protein ndc-80 (ndc-80), mRNA blastn 657 396 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6885511 6885511 PRJNA540466_S_NODE_17026_length_426_cov_1.747875_g16478_i0 PRJNA540466 17026 426 1.747875 7.4459475 Caenorhabditis elegans 6239 Nematoda Nematoda 778 0   NTclustered gi|416296|gb|U00240.1|U00240 6239 g16478 i0 100 4.19953051643192 421 0 99 0 3 423 2182 2602 Caenorhabditis elegans beta-amyloid protein precursor (APL-1) mRNA complete cds blastn 1789 778 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8160773 8160773 PRJNA540466_S_NODE_28347_length_337_cov_1.166667_g27798_i0 PRJNA540466 28347 337 1.166667 3.93166779 Strongyloides ratti 34506 Nematoda Nematoda 185 3.01e-42   NTclustered gi|1376134653|ref|XM_024647302.1| 34506 g27798 i0 79.537 45.1691394658754 259 53 77 0 77 335 748 490 Strongyloides ratti 60S ribosomal protein L8 (SRAE_1000046600), partial mRNA blastn 15222 185 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
9436177 9436177 PRJNA540466_S_NODE_19548_length_400_cov_1.256881_g18999_i0 PRJNA540466 19548 400 1.256881 5.027524 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.038   NTclustered gi|690019075|emb|LM526367.1| 174720 g18999 i0 100 0.07 28 0 7 0 117 144 408 435 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000712 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10046897 10046897 PRJNA540466_S_NODE_37428_length_298_cov_3.302222_g36879_i0 PRJNA540466 37428 298 3.302222 9.84062156 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 1.27e-10   NTclustered gi|380447938|gb|JQ074059.1| 34510 g36879 i0 97.826 0.61744966442953 46 1 15 0 1 46 1108 1153 Heterodera avenae actin 2 mRNA, complete cds blastn 184 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera avenae
10712106 10712106 PRJNA540466_S_NODE_36129_length_303_cov_1.673913_g35580_i0 PRJNA540466 36129 303 1.673913 5.07195639 Pristionchus uniformis 358041 Nematoda Nematoda 159 1.6199999999999996e-34   NTclustered gi|150984659|gb|EF634991.1| 358041 g35580 i0 82.292 31.8316831683168 192 26 61 6 96 280 4 194 Pristionchus uniformis small subunit ribosomal protein 28 (rps-28) mRNA, complete cds blastn 9645 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus uniformis
10712124 10712124 PRJNA540466_S_NODE_38809_length_294_cov_1.393665_g38260_i0 PRJNA540466 38809 294 1.393665 4.0973751 Caenorhabditis elegans 6239 Nematoda Nematoda 538 1.7199999999999995e-148   NTclustered gi|1831511366|ref|NM_066884.7| 6239 g38260 i0 99.66 4.98299319727891 294 1 100 0 1 294 310 17 Caenorhabditis elegans Transthyretin-like protein 15 (ttr-15), mRNA blastn 1465 538 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10712247 10712247 PRJNA540466_S_NODE_50809_length_262_cov_3.179894_g50260_i0 PRJNA540466 50809 262 3.179894 8.33132228 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.024   NTclustered gi|1376150295|ref|XM_024643536.1| 34506 g50260 i0 96.774 0.118320610687023 31 1 12 0 214 244 455 485 Strongyloides ratti Nrf2-associated protein keap1b (SRAE_2000464100), partial mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13261930 13261930 PRJNA540466_S_NODE_47891_length_269_cov_1.341837_g47342_i0 PRJNA540466 47891 269 1.341837 3.60954153 Diplogasteroides magnus 560213 Nematoda Nematoda 165 3.03e-36   NTclustered gi|256709124|gb|GQ422214.1| 560213 g47342 i0 80.263 74.2899628252788 228 37 83 8 1 224 504 727 Diplogasteroides magnus large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 19984 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteroididae Diplogasteroides Diplogasteroides magnus
15810798 15810798 PRJNA540466_S_NODE_35053_length_307_cov_1.645299_g34504_i0 PRJNA540466 35053 307 1.645299 5.05106793 Caenorhabditis elegans 6239 Nematoda Nematoda 564 2.98e-156   NTclustered gi|1972266114|ref|NM_001027628.8| 6239 g34504 i0 100 5.68403908794788 305 0 99 0 3 307 1101 797 Caenorhabditis elegans ADP/ATP translocase (ant-1.1), mRNA blastn 1745 564 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17085621 17085621 PRJNA540466_S_NODE_49054_length_266_cov_2.284974_g48505_i0 PRJNA540466 49054 266 2.284974 6.07803084 Caenorhabditis elegans 6239 Nematoda Nematoda 453 5.71e-123   NTclustered gi|1972264789|ref|NM_066171.10| 6239 g48505 i0 100 51.3947368421053 245 0 92 0 22 266 136 380 Caenorhabditis elegans Small ribosomal subunit protein uS11 (rps-14), mRNA blastn 13671 453 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17696431 17696431 PRJNA540466_S_NODE_62094_length_244_cov_0.900585_g61545_i0 PRJNA540466 62094 244 0.900585 2.1974274 Metazoa 33208 Nematoda Nematoda 159 1.2599999999999999e-34   NTclustered gi|2445348377|ref|XM_003109331.2| 31234 g61545 i0 83.333 3.01639344262295 174 27 71 2 38 210 562 734 Caenorhabditis remanei uncharacterized protein (GCK72_000822), partial mRNA blastn 736 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
20910029 20910029 PRJNA540466_S_NODE_31017_length_324_cov_1.067729_g30468_i0 PRJNA540466 31017 324 1.067729 3.45944196 Caenorhabditis elegans 6239 Nematoda Nematoda 575 1.4599999999999995e-159   NTclustered gi|687865451|emb|LK927650.1| 6239 g30468 i0 100 2.79012345679012 311 0 96 0 1 311 74894 74584 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000107 blastn 904 575 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20910181 20910181 PRJNA540466_S_NODE_50437_length_263_cov_2.184211_g49888_i0 PRJNA540466 50437 263 2.184211 5.74447493 Strongyloides ratti 34506 Nematoda Nematoda 150 8.279999999999998e-32   NTclustered gi|1376143403|ref|XM_024652078.1| 34506 g49888 i0 86.331 16.7186311787072 139 17 52 2 34 171 1181 1318 Strongyloides ratti Elongation factor 1-alpha (SRAE_2000115900), partial mRNA blastn 4397 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22184874 22184874 PRJNA540466_S_NODE_45558_length_274_cov_3.895522_g45009_i0 PRJNA540466 45558 274 3.895522 10.67373028 Caenorhabditis elegans 6239 Nematoda Nematoda 490 4.499999999999999e-134   NTclustered gi|1972297290|ref|NM_074459.8| 6239 g45009 i0 100 4.43430656934307 265 0 97 0 4 268 21 285 Caenorhabditis elegans Large ribosomal subunit protein eL38 (rpl-38), mRNA blastn 1215 490 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23460151 23460151 PRJNA540466_S_NODE_27879_length_339_cov_2.560150_g27330_i0 PRJNA540466 27879 339 2.56015 8.6789085 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.032   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g27330 i0 100 0.165191740412979 28 0 8 0 187 214 630 657 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
23460261 23460261 PRJNA540466_S_NODE_38979_length_293_cov_2.881818_g38430_i0 PRJNA540466 38979 293 2.881818 8.44372674 Poikilolaimus oxycercus 96659 Nematoda Nematoda 401 2.3399999999999992e-107   NTclustered gi|158821920|gb|EU195984.1| 96659 g38430 i0 98.678 78.2354948805461 227 1 77 2 69 293 247 21 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 22923 401 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
24734198 24734198 PRJNA540466_S_NODE_61100_length_245_cov_1.354651_g60551_i0 PRJNA540466 61100 245 1.354651 3.31889495 Caenorhabditis elegans 6239 Nematoda Nematoda 431 2.4299999999999996e-116   NTclustered gi|1972298706|ref|NM_075232.9| 6239 g60551 i0 99.576 3.58367346938775 236 1 96 0 10 245 5 240 Caenorhabditis elegans transcellular chaperone signaling (x)cross tissue (txt-14), mRNA blastn 878 431 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;