RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA540466 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1783569 1783569 PRJNA540466_S_NODE_51802_length_260_cov_3.021390_g51253_i0 PRJNA540466 51802 260 3.02139 7.855614 Pendulispora brunnea 2905690 Bacteria Bacteria 58.4 5.09e-4   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g51253 i0 97.059 0.130769230769231 34 1 13 0 91 124 4167438 4167471 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 34 58.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
13262128 13262128 PRJNA540466_S_NODE_71811_length_202_cov_4.186047_g71262_i0 PRJNA540466 71811 202 4.186047 8.45581494 Myxococcus fulvus 33 Bacteria Bacteria 200 5.929999999999999e-47   NTclustered gi|2869653495|gb|CP175551.1| 33 g71262 i0 87.719 12.990099009901 171 21 85 0 10 180 127515 127685 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 2624 200 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;