RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA540466 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4334975 4334975 PRJNA540466_S_NODE_36164_length_303_cov_1.413043_g35615_i0 PRJNA540466 36164 303 1.413043 4.28152029 Dictyostelium discoideum 44689 Evosea other_Eukaryota 159 1.6199999999999996e-34   NTclustered gi|66820862|ref|XM_638894.1| 352472 g35615 i0 90.244 26.2673267326733 123 11 40 1 171 292 1131 1009 Dictyostelium discoideum AX4 hypothetical protein (act20) mRNA, complete cds blastn 7959 159 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
6885449 6885449 PRJNA540466_S_NODE_10246_length_528_cov_9.670330_g9714_i0 PRJNA540466 10246 528 9.67033 51.0593424 Soliformovum expulsum 435423 Evosea other_Eukaryota 451 4.37e-122   NTclustered gi|260909293|gb|FJ766479.1| 435423 g9714 i0 91.95 41.1344696969697 323 25 61 1 56 377 844 1166 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 21719 451 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum
8160611 8160611 PRJNA540466_S_NODE_15287_length_447_cov_2.997326_g14740_i0 PRJNA540466 15287 447 2.997326 13.39804722 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.043   NTclustered gi|330845127|ref|XM_003294403.1| 5786 g14740 i0 100 0.0626398210290828 28 0 6 0 65 92 560 533 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_84927), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
8160692 8160692 PRJNA540466_S_NODE_21647_length_381_cov_3.863636_g21098_i0 PRJNA540466 21647 381 3.863636 14.72045316 Protostelium mycophagum 472931 Evosea other_Eukaryota 87.9 9.96e-13   NTclustered gi|262262904|gb|FJ766447.1| 472931 g21098 i0 80.702 16.6640419947507 114 20 30 2 34 147 1187 1298 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 6349 87.9 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
13261652 13261652 PRJNA540466_S_NODE_16751_length_429_cov_3.766854_g16204_i0 PRJNA540466 16751 429 3.766854 16.15980366 Acytostelium subglobosum 361139 Evosea other_Eukaryota 198 5.02e-46   NTclustered gi|831767479|ref|XM_012896660.1| 1410327 g16204 i0 81.124 0.58041958041958 249 45 58 2 96 343 248 1 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 249 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
15811124 15811124 PRJNA540466_S_NODE_7613_length_590_cov_2.199226_g7131_i0 PRJNA540466 7613 590 2.199226 12.9754334 Dictyostelium discoideum 44689 Evosea other_Eukaryota 326 3.11e-84   NTclustered gi|166240288|ref|XM_631726.2| 352472 g7131 i0 78.614 53.4389830508475 505 98 85 10 91 590 522 23 Dictyostelium discoideum AX4 S60 ribosomal protein L10 (rpl10) mRNA, complete cds blastn 31529 326 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20909931 20909931 PRJNA540466_S_NODE_21897_length_379_cov_3.130719_g21348_i0 PRJNA540466 21897 379 3.130719 11.86542501 Physarum polycephalum 5791 Evosea other_Eukaryota 370 8.779999999999999e-98   NTclustered gi|15284027|dbj|AB070525.1| 5791 g21348 i0 92.308 47.5963060686016 260 20 69 0 113 372 394 135 Physarum polycephalum ub1 mRNA for ubiquitin 1, complete cds blastn 18039 370 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
23460352 23460352 PRJNA540466_S_NODE_51379_length_261_cov_2.351064_g50830_i0 PRJNA540466 51379 261 2.351064 6.13627704 Heterostelium album 2086695 Evosea other_Eukaryota 65.8 3.06e-6   NTclustered gi|1160561030|ref|XM_020578730.1| 670386 g50830 i0 95.238 0.160919540229885 42 0 16 2 3 43 448 488 Polysphondylium pallidum PN500 Ras GTPase (rapA), partial mRNA blastn 42 65.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;