RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA540466 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1783488 1783488 PRJNA540466_S_NODE_42942_length_281_cov_3.225962_g42393_i0 PRJNA540466 42942 281 3.225962 9.06495322 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 331 2.97e-86   NTclustered gi|470441658|ref|XM_004339391.1| 1257118 g42393 i0 100 0.814946619217082 179 0 64 0 103 281 579 401 Acanthamoeba castellanii str. Neff ribosomal L5P family Cterminus, putative (ACA1_061660), partial mRNA blastn 229 331 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1783691 1783691 PRJNA540466_S_NODE_68242_length_228_cov_3.122581_g67693_i0 PRJNA540466 68242 228 3.122581 7.11948468 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 316 6.53e-82   NTclustered gi|470389910|ref|XM_004334475.1| 1257118 g67693 i0 97.826 62.109649122807 184 3 81 1 1 184 103 285 Acanthamoeba castellanii str. Neff ribosomal protein s27, putative (ACA1_309510), partial mRNA blastn 14161 316 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14536960 14536960 PRJNA540466_S_NODE_51452_length_261_cov_1.845745_g50903_i0 PRJNA540466 51452 261 1.845745 4.81739445 Cochliopodium minus 313997 Discosea other_Eukaryota 399 7.379999999999998e-107   NTclustered gi|330902862|gb|JF298257.1| 313997 g50903 i0 96.356 9.18007662835249 247 2 94 6 1 246 244 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2396 399 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
15810975 15810975 PRJNA540466_S_NODE_54713_length_255_cov_0.895604_g54164_i0 PRJNA540466 54713 255 0.895604 2.2837902 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 252 2.13e-62   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g54164 i0 90.306 10.0078431372549 196 14 77 4 24 219 851 661 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 2552 252 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
18359725 18359725 PRJNA540466_S_NODE_57995_length_249_cov_1.971591_g57446_i0 PRJNA540466 57995 249 1.971591 4.90926159 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 449 6.840000000000001e-122   NTclustered gi|470441658|ref|XM_004339391.1| 1257118 g57446 i0 99.197 79.1606425702811 249 2 100 0 1 249 192 440 Acanthamoeba castellanii str. Neff ribosomal L5P family Cterminus, putative (ACA1_061660), partial mRNA blastn 19711 449 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19634268 19634268 PRJNA540466_S_NODE_52536_length_259_cov_1.446237_g51987_i0 PRJNA540466 52536 259 1.446237 3.74575383 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 265 2.78e-66   NTclustered gi|470391487|ref|XM_004334627.1| 1257118 g51987 i0 98.658 0.575289575289575 149 2 58 0 111 259 213 65 Acanthamoeba castellanii str. Neff ATP synthase subunit epsilon, mitochondrial, putative (ACA1_091720), partial mRNA blastn 149 265 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;