RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14536801 14536801 PRJNA540466_S_NODE_32192_length_318_cov_3.591837_g31643_i0 PRJNA540466 32192 318 3.591837 11.42204166 Synchytrium microbalum 1806994 Fungi Fungi 110 1.74e-19   NTclustered gi|1759146603|ref|XM_031168002.1| 1806994 g31643 i0 85.047 4.73270440251572 107 16 34 0 20 126 1226 1332 Synchytrium microbalum uncharacterized protein (SmJEL517_g02074), partial mRNA blastn 1505 110 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
15810578 15810578 PRJNA540466_S_NODE_13153_length_477_cov_3.584158_g12609_i0 PRJNA540466 13153 477 3.584158 17.09643366 Fimicolochytrium jonesii 1396493 Fungi Fungi 117 1.62e-21   NTclustered gi|2432057423|ref|XM_053069416.1| 1396493 g12609 i0 91.011 0.186582809224319 89 5 18 3 41 127 2017 2104 Fimicolochytrium jonesii hsp71-like protein (EV422DRAFT_516945), mRNA blastn 89 117 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
22184841 22184841 PRJNA540466_S_NODE_41598_length_285_cov_2.136792_g41049_i0 PRJNA540466 41598 285 2.136792 6.0898572 Synchytrium microbalum 1806994 Fungi Fungi 97.1 1.2e-15   NTclustered gi|1759148161|ref|XM_031168414.1| 1806994 g41049 i0 87.805 0.824561403508772 82 10 29 0 204 285 941 860 Synchytrium microbalum uncharacterized protein (SmJEL517_g02486), partial mRNA blastn 235 97.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;