RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Brachiopoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1783509 1783509 PRJNA540466_S_NODE_45462_length_275_cov_1.143564_g44913_i0 PRJNA540466 45462 275 1.143564 3.144801 Lingula anatina 7574 Brachiopoda other_Eukaryota 76.8 1.5e-9   NTclustered gi|919009759|ref|XM_013533919.1| 7574 g44913 i0 83.333 2.13818181818182 84 12 30 2 184 266 2651 2569 PREDICTED: Lingula anatina transducin-like enhancer protein 4 (LOC106158072), transcript variant X3, mRNA blastn 588 76.8 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
8160905 8160905 PRJNA540466_S_NODE_43607_length_279_cov_11.194175_g43058_i0 PRJNA540466 43607 279 11.194175 31.23174825 Lingula anatina 7574 Brachiopoda other_Eukaryota 182 3.14e-41   NTclustered gi|919004430|ref|XM_013524089.1| 7574 g43058 i0 81.579 52.4623655913978 228 34 80 7 9 232 288 65 PREDICTED: Lingula anatina 40S ribosomal protein S23 (LOC106151024), mRNA blastn 14637 182 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
24734122 24734122 PRJNA540466_S_NODE_53380_length_257_cov_2.391304_g52831_i0 PRJNA540466 53380 257 2.391304 6.14565128 Lingula anatina 7574 Brachiopoda other_Eukaryota 165 2.88e-36   NTclustered gi|919008701|ref|XM_013533640.1| 7574 g52831 i0 83.425 2.22568093385214 181 26 70 4 48 226 518 340 PREDICTED: Lingula anatina ubiquitin-40S ribosomal protein S27a (LOC106157859), mRNA blastn 572 165 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;