RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA540466 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5611626 5611626 PRJNA540466_S_NODE_16605_length_431_cov_1.592179_g16058_i0 PRJNA540466 16605 431 1.592179 6.86229149 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 320 1.0299999999999999e-82   NTclustered gi|209883067|ref|XM_002142926.1| 441375 g16058 i0 97.838 0.4292343387471 185 4 43 0 247 431 254 70 Cryptosporidium muris RN66 uncharacterized protein (CMU_004300), partial mRNA blastn 185 320 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
5612141 5612141 PRJNA540466_S_NODE_9645_length_541_cov_8.177350_g9122_i0 PRJNA540466 9645 541 8.17735 44.2394635 Cryptosporidium sp. chipmunk genotype I 1280935 SAR_Eukaryotes SAR_Eukaryotes 268 4.8499999999999996e-67   NTclustered gi|2787707067|ref|XM_067346846.1| 1280935 g9122 i0 85.227 24.1959334565619 264 35 48 3 280 541 425 164 Cryptosporidium sp. chipmunk genotype I calmodulin (ELE39_003701), partial mRNA blastn 13090 268 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. chipmunk genotype I
11986908 11986908 PRJNA540466_S_NODE_53010_length_258_cov_1.545946_g52461_i0 PRJNA540466 53010 258 1.545946 3.98854068 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 73.1 1.8e-8   NTclustered gi|1620167164|ref|XM_028681516.1| 880535 g52461 i0 90.909 0.213178294573643 55 4 21 1 95 149 1136 1083 Plasmodium sp. gorilla clade G2 conserved protein, unknown function (PADL01_0817200), partial mRNA blastn 55 73.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
17696387 17696387 PRJNA540466_S_NODE_32454_length_317_cov_3.663934_g31905_i0 PRJNA540466 32454 317 3.663934 11.61467078 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 135 2.8700000000000003e-27   NTclustered gi|1145261860|ref|XM_012909009.2| 5854 g31905 i0 87.395 5.1608832807571 119 13 37 2 4 121 84 201 Plasmodium reichenowi 40S ribosomal protein S27, putative partial mRNA blastn 1636 135 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
18359563 18359563 PRJNA540466_S_NODE_38815_length_294_cov_1.389140_g38266_i0 PRJNA540466 38815 294 1.38914 4.0840716 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|1620141828|ref|XM_028676858.1| 85471 g38266 i0 100 0.0952380952380952 28 0 10 0 260 287 1392 1365 Plasmodium relictum transcription factor with AP2 domain(s), putative (AP2-O), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
20244930 20244930 PRJNA540466_S_NODE_51976_length_260_cov_1.663102_g51427_i0 PRJNA540466 51976 260 1.663102 4.3240652 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 209 1.33e-49   NTclustered gi|527100028|dbj|AK441278.1| 5865 g51427 i0 83.406 84.0807692307692 229 34 87 4 1 227 664 890 Babesia bovis BBOV_III011800 mRNA for ribosomal protein L2 family protein, complete cds, clone: XBBk012367, strain: Texas blastn 21861 209 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis
23460005 23460005 PRJNA540466_S_NODE_1239_length_958_cov_9.723164_g1063_i0 PRJNA540466 1239 958 9.723164 93.14791112 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.027   NTclustered gi|1620130649|ref|XM_028673638.1| 5849 g1063 i0 100 0.0605427974947808 29 0 3 0 502 530 9964 9992 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00484800), partial mRNA blastn 58 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
23460414 23460414 PRJNA540466_S_NODE_57819_length_249_cov_3.363636_g57270_i0 PRJNA540466 57819 249 3.363636 8.37545364 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|1931714186|ref|XM_008627441.2| 54757 g57270 i0 100 0.112449799196787 28 0 11 0 156 183 631 604 Plasmodium vinckei vinckei conserved Plasmodium membrane protein, unknown function (PVVCY_0500690), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;